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Parallelize petab.get_optimization_to_simulation_parameter_mapping #205

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dweindl opened this issue Dec 18, 2019 · 0 comments
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Parallelize petab.get_optimization_to_simulation_parameter_mapping #205

dweindl opened this issue Dec 18, 2019 · 0 comments
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enhancement New feature or request

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dweindl commented Dec 18, 2019

Takes too long for large models and is already in good shape to generate mapping for different simulation conditions in parallel.
@dweindl dweindl added enhancement New feature or request pythonlib labels Dec 18, 2019
@dweindl dweindl self-assigned this Jan 9, 2020
dweindl added a commit that referenced this issue Jan 15, 2020
@dweindl
Parallelize petab.get_optimization_to_simulation_parameter_mapping (C…
06a7111 
…loses #205)
@dweindl dweindl mentioned this issue Jan 15, 2020
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@dweindl dweindl mentioned this issue Jan 28, 2020
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dweindl added a commit that referenced this issue Jan 29, 2020
@dweindl
Merge pull request #248 from ICB-DCM/release_0.1.0
78924fb 
Release 0.1.0

Data format:

* Introduce observables table instead of SBML assignment rules for defining
  observation model (#244) (moves observableTransformation and noiseModel
  from the measurement table to the observables table)
* Allow initial concentrations / sizes in condition table (#238)
* Fixes and clarifications in the format documentation
* Changes in prior columns of the parameter table (#222)
* Introduced separate version number of file format, this release being
  version 1

Library:

* Adaptations to new file formats
* Various bugfixes and clean-up, especially in visualization and validator
* Parameter mapping changed to include all model parameters and not only
  those differing from the ones defined inside the SBML model
* Introduced constants for all field names and string options, replacing
  most string literals in the code (#228)
* Added unit tests and additional format validation steps
* Optional parallelization of parameter mapping (#205)
* Extended documentation (in-source and example Jupyter notebooks)
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