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Feature constants #228

Merged
merged 7 commits into from
Jan 20, 2020
Merged

Feature constants #228

merged 7 commits into from
Jan 20, 2020

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yannikschaelte
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fixes #223

@yannikschaelte yannikschaelte added this to the Release 0.0.3 milestone Jan 20, 2020
@yannikschaelte yannikschaelte self-assigned this Jan 20, 2020
dweindl
dweindl approved these changes Jan 20, 2020
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Great!

@yannikschaelte yannikschaelte merged commit 1fd1d76 into develop Jan 20, 2020
@yannikschaelte yannikschaelte deleted the feature_constants branch January 20, 2020 12:52
@dweindl dweindl mentioned this pull request Jan 28, 2020
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dweindl added a commit that referenced this pull request Jan 29, 2020
@dweindl
Merge pull request #248 from ICB-DCM/release_0.1.0
78924fb 
Release 0.1.0

Data format:

* Introduce observables table instead of SBML assignment rules for defining
  observation model (#244) (moves observableTransformation and noiseModel
  from the measurement table to the observables table)
* Allow initial concentrations / sizes in condition table (#238)
* Fixes and clarifications in the format documentation
* Changes in prior columns of the parameter table (#222)
* Introduced separate version number of file format, this release being
  version 1

Library:

* Adaptations to new file formats
* Various bugfixes and clean-up, especially in visualization and validator
* Parameter mapping changed to include all model parameters and not only
  those differing from the ones defined inside the SBML model
* Introduced constants for all field names and string options, replacing
  most string literals in the code (#228)
* Added unit tests and additional format validation steps
* Optional parallelization of parameter mapping (#205)
* Extended documentation (in-source and example Jupyter notebooks)
@yannikschaelte yannikschaelte mentioned this pull request Jan 30, 2020
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@yannikschaelte @dweindl