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Commits on Feb 1, 2020

• Add check for valid identifiers (Closes #179) (#253)

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  dweindl

  and

  plakrisenko

  authored
  229e78f

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Commits on Jan 28, 2020

• Observables table instead of SBML assignment rules (#244)

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  dweindl

  authored
  c334edc

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Commits on Jan 22, 2020

• Allow initial concentrations / sizes in condition table (#238)

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  dweindl

  and

  LeonardSchmiester

  authored
  a58b79f

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Commits on Jan 20, 2020

• Fixes ys (#237)

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  yannikschaelte

  authored
  154c788

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• Required vs. allowed parameters in parameter table (#230)

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  dweindl

  authored
  5eed48b

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• Feature constants (#228)

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  yannikschaelte

  authored
  1fd1d76

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• Update prior definitions; add checks (#222)

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  yannikschaelte

  authored
  9e4e2c5

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• Fix collection of parametric overrides from condition table

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  dweindl

  committed
  8a57085

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Commits on Jan 15, 2020

• petablint: check that all conditionIds referenced in measurement tabl… (#209)

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  dweindl

  authored
  c16432f

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Commits on Dec 17, 2019

• Enable missing assert_noise_distributions_valid in petablint

  dweindl

  committed
  636abeb

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Commits on Dec 16, 2019

• Fix validation: Don't access non-existing column observableTransformation (Closes #174)

  dweindl

  committed
  16b4ede

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• YAML file for grouping PEtab files (#183) (Closes 49)

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  dweindl

  authored
  54c526a

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• Reorganize PEtab library (#177)

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  2 peopleauthored and

  MerktSimon

  committed
  17fac2c

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Commits on Dec 10, 2019

• Update format documentation with respect to data and parameter scales… (#169)

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  dweindl

  authored
  38396a4

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Commits on Dec 4, 2019

• Cleanup (#167)

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  dweindl

  authored
  60d5e1f

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Commits on Dec 3, 2019

• Fix(lint) correct handling of optional columns. Check before access.

  dweindl

  committed
  5dce8d2

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Commits on Dec 2, 2019

• Extend validator to check if all required parameters are present in parameter table (Closes #43) (#159)

  dweindl

  authored
  eca81a5

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Commits on Nov 29, 2019

• Fixup #151: ignore conditionName column (#153)

  dweindl

  authored
  90d8545

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• Verify condition table column names occur as model parameters (Closes #150) (#151)

  dweindl

  authored
  12f75a1

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Commits on Apr 10, 2019

• Fix nan check

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  dweindl

  committed
  54503b2

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Commits on Apr 9, 2019

• Fix assert_noise_distributions_valid (#99)

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  dweindl

  authored
  13b67de

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Commits on Mar 21, 2019

• Do not check parameter bounds if parameter is not estimated (#88)

  

  elbaraim

  authored and

  dweindl

  committed
  10c224e

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Commits on Mar 20, 2019

• Merge branch 'develop' into feature_obs_scale

  yannikschaelte

  committed
  b825313

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• noise distr: lint also missing values, add test

  yannikschaelte

  committed
  0b56b8a

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Commits on Mar 19, 2019

• Fix parameter check constant (#82)

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  dweindl

  authored
  22d6764

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• print -> logger.warn

  yannikschaelte

  committed
  669a82b

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• fix flake8

  yannikschaelte

  committed
  98fab22

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• make observableTransformation col optional

  yannikschaelte

  committed
  b48525a

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• various fixes

  yannikschaelte

  committed
  3e645a7

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• read noiseDistributions from measurement file; check validity in lint

  yannikschaelte

  committed
  c84a9bf

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Commits on Mar 4, 2019

• Remove duplicate function, remove extra arguments (#78)

  dweindl

  authored
  623d3a0

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Commits on Feb 18, 2019

• Add assert_model_parameters_in_condition_or_parameter_table (#43) (#62)

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  dweindl

  authored
  3a84e84

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• Doc. Fail.

  dweindl

  committed
  4255a28

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Commits on Feb 16, 2019

• Make petablint more error-tolerant and prettify

  dweindl

  committed
  3182a16

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• Fix whitespace-checking issues, extend check (Closes #59)

  dweindl

  committed
  bc373f2

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