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Pull requests list

Add H5 GenomicFeatures support for more flexible target datatypes
#200 by kathyxchen was merged Dec 16, 2024 Loading…
Adjust lower bound for NumPy/Cython dependency requirements
#199 by kathyxchen was merged Jul 9, 2024 Loading…
Python 3.9+ fix for Numpy/Cython .pyx issue
#198 by kathyxchen was merged Jul 9, 2024 Loading…
Updating seqweaver
#188 by aviyalitman was merged Oct 31, 2023 Loading…
28
Early stopping and other parameters for learning rate scheduler
#184 by rfriedman22 was merged Sep 19, 2022 Loading…
1
2
set deterministic parameter in TrainModel
#181 by kathyxchen was merged Oct 19, 2021 Loading…
1
Bugfix for #178
#179 by rfriedman22 was merged Oct 4, 2021 Loading…
1
3
add isinstance check of Sampler to FileSampler in MultiSampler class
#177 by kathyxchen was merged Sep 22, 2021 Loading…
Allow for assessing performance in multi-class classification setting
#176 by rfriedman22 was merged Oct 4, 2021 Loading…
4
Bug fix for slicing bases_arr
#175 by rfriedman22 was merged Sep 13, 2021 Loading…
1
1
Additional seeding for reproducibility
#173 by rfriedman22 was merged Aug 31, 2021 Loading…
1
update version to 0.5.0
#172 by kathyxchen was merged Jun 8, 2021 Loading…
Minor documentation updates ahead of 0.5.0 release
#171 by kathyxchen was merged Jun 7, 2021 Loading…
Fix MultiSampler test partition bug
#170 by kathyxchen was merged Jun 4, 2021 Loading…
1
Bug fixes to parse learning rate from configs
#169 by rfriedman22 was merged Jun 4, 2021 Loading…
1
2
Bugfixes for EvaluateModel and MatFileSampler
#168 by kathyxchen was merged Jun 7, 2021 Loading…
1
Log average train loss over nth_step_report_stats
#165 by arlapin was closed Sep 28, 2021 Loading…
2
Let EvaluateModel accept a list of metrics
#164 by arlapin was merged Jun 4, 2021 Loading…
2
Fix a typo and documentation
#162 by arlapin was merged Mar 26, 2021 Loading…
2
Delete autograd.Variable as it is deprecated since pytorch v0.4.1
#160 by arlapin was merged Jun 4, 2021 Loading…
2
Ignore downloaded data and local VS Code config
#159 by arlapin was merged Mar 4, 2021 Loading…
3
Fix wrong filename
#158 by sashuIya was merged Feb 26, 2021 Loading…
2
Documentation fix
#156 by kathyxchen was merged Oct 29, 2020 Loading…
1
Improve CLI
#153 by cthoyt was merged Oct 7, 2020 Loading…
1
4
Sample without replacement in RandomPositionSampler
#147 by bmacedo-lgtm was closed Oct 4, 2021 • Draft
40
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