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@FunctionLab

Troyanskaya Laboratory

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  1. onboarding onboarding Public

    Information for new Troyanskaya lab members

    4 1

  2. function function Public

    Python library for functional genomics

    Python 4 4

  3. selene selene Public

    a framework for training sequence-level deep learning networks

    Jupyter Notebook 381 91

  4. ExPecto ExPecto Public

    predicting expression effects of human genome variants ab initio from sequence

    Python 127 41

  5. sleipnir sleipnir Public

    C++ 4 1

Repositories

Showing 10 of 23 repositories
  • asd-pheno-classes Public

    Scripts to generate figures and data.

    FunctionLab/asd-pheno-classes’s past year of commit activity
    Python 1 0 0 0 Updated May 2, 2025
  • ExPecto Public

    predicting expression effects of human genome variants ab initio from sequence

    FunctionLab/ExPecto’s past year of commit activity
    Python 127 41 15 0 Updated Jan 28, 2025
  • selene Public

    a framework for training sequence-level deep learning networks

    FunctionLab/selene’s past year of commit activity
    Jupyter Notebook 381 BSD-3-Clause-Clear 91 24 2 Updated Dec 16, 2024
  • Seal Public

    Sequence-to-expression transfer learning framework for context-specific prediction of variant effects on expression

    FunctionLab/Seal’s past year of commit activity
    Python 0 0 0 0 Updated Nov 12, 2024
  • onboarding Public

    Information for new Troyanskaya lab members

    FunctionLab/onboarding’s past year of commit activity
    4 1 0 0 Updated Oct 24, 2024
  • SPEEDI Public

    Single-cell Pipeline for End to End Data Integration (SPEEDI)

    FunctionLab/SPEEDI’s past year of commit activity
    R 3 0 1 0 Updated Oct 23, 2024
  • tapioca Public

    a framework for predicting global protein-protein interaction networks from dynamic mass spec data

    FunctionLab/tapioca’s past year of commit activity
    Python 24 BSD-3-Clause-Clear 1 1 1 Updated Mar 20, 2024
  • find_website_network Public

    shiny app for FIND network visualization

    FunctionLab/find_website_network’s past year of commit activity
    R 0 1 0 0 Updated Nov 2, 2023
  • function Public

    Python library for functional genomics

    FunctionLab/function’s past year of commit activity
    Python 4 GPL-3.0 4 0 2 Updated Jul 6, 2023
  • sei-framework Public

    code to run sei and obtain sei and sequence class predictions

    FunctionLab/sei-framework’s past year of commit activity
    Python 102 7 14 0 Updated Dec 20, 2022
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