Releases: EBIvariation/eva-sub-cli
Releases · EBIvariation/eva-sub-cli
v0.5.2
What's Changed
- EVA-3987 Remove non-vcf files from metadata by @nitin-ebi in #134
- EVA-3988 - Add errors to the validation report when missing md5 of file size info by @tcezard in #136
- EVA-3942: Check if reference is GCA by @apriltuesday in #137
- EVA-3995: Update validation overview doc by @apriltuesday in #135
- EVA-4002: Remove ability to pass files on command line by @apriltuesday in #139
- Add publication regex by @tcezard in #138
- EVA-3996: Update input files overview by @apriltuesday in #140
- Update docker image by @tcezard in #141
Full Changelog: v0.5.1...v0.5.2
v0.5.1
What's Changed
- Fix data validation in eva submission template by @tcezard in #129
- EVA-3972 Add documentation for submitting to an existing project by @nitin-ebi in #128
- Add validation tasks by @apriltuesday in #119
- EVA-3989: Update documentation for validation tasks by @apriltuesday in #131
- EVA-3986 upload metadata json and show error return by eva-submission-ws by @nitin-ebi in #132
- Update docker version by @tcezard in #133
Full Changelog: v0.5.0...v0.5.1
v0.5.0
What's Changed
- EVA-3621 Add explicit support for adding analyses to an existing project by @nitin-ebi in #115
- Fix conversion configuration and update docker image by @tcezard in #126
- EVA-3669 - Cast all to string by @tcezard in #124
- Only check evidence types that have the property by @tcezard in #125
- EVA-3975 - Use different icon for error vs critical by @tcezard in #127
Full Changelog: v0.4.14...v0.5.0
v0.4.14
What's Changed
- EVA-3913: Update installation documentation by @apriltuesday in #114
- Add label to all nextflow tasks by @tcezard in #116
- Do not update metadata when evidence type check fails by @apriltuesday in #118
- Ensure that the fasta and vcf files are files and not directories by @tcezard in #117
- Remove sample schemas besides ERC000011 by @apriltuesday in #120
Full Changelog: v0.4.13...v0.4.14
v0.4.13
What's Changed
- EVA-3903: Align JSON fields with ERC000011 and add schema version by @apriltuesday in #109
Full Changelog: v0.4.12...v0.4.13
v0.4.12
What's Changed
- Update biosamples schema endpoint by @apriltuesday in #104
- Bump pyutils version by @apriltuesday in #105
- EVA-3893 Update evidence_type_checker to work correctly with file paths by @nitin-ebi in #106
Full Changelog: v0.4.11...v0.4.12
v0.4.11
What's Changed
- EVA-3820: Save ready_for_submission in results as well as config by @apriltuesday in #98
- EVA-3820: Fix report generation by @apriltuesday in #99
- Update vcf-validator in docker and bump docker image version by @tcezard in #96
- Update project accession regex by @tcezard in #101
- Add evidence type check and consent statement by @tcezard in #102
Full Changelog: v0.4.10...v0.4.11
v0.4.10
What's Changed
- EVA-3833: Address user feedback on documentation by @apriltuesday in #93
- Parse NCBI create date for biosamples by @tcezard in #95
Full Changelog: v0.4.9...v0.4.10
v0.4.9
What's Changed
- EVA-3825: Add text reports for validation by @apriltuesday in #91
- Update requirements.txt by @tcezard in #92
Full Changelog: v0.4.8...v0.4.9
v0.4.8
What's Changed
- EVA-3828: Fix issues in INSDC check by @apriltuesday in #87
- EVA-3804 Trigger integration tests by @nitin-ebi in #88
- EVA-3818: Fixes for biosample accession, xlsx conversion, and file filtering by @apriltuesday in #86
- EVA-3823: Make file paths in metadata consistent by @apriltuesday in #90
Full Changelog: v0.4.7...v0.4.8