Adding testing with custom-build netcdf and HDF5 versions.

.github/workflows/netcdf-4.7.4.yml

@@ -0,0 +1,207 @@
+name: netcdf-4.7.4
+on: [push, pull_request]
+
+jobs:
+  build:
+    runs-on: ${{ matrix.os }}
+    env:
+      CC: gcc-9
+      FC: gfortran-9
+      CXX: g++-9
+    strategy:
+      matrix:
+        os: [macos-10.15, ubuntu-20.04]
+        compiler: [gcc-9]      
+
+    steps:
+    - name: cache-mpich
+      id: cache-mpich
+      uses: actions/cache@v2
+      with:
+        path: ~/mpich
+        key: mpich-${{ runner.os }}-3.3.2-1
+
+    - name: build-mpich
+      if: steps.cache-mpich.outputs.cache-hit != 'true'
+      run: |
+        if [[ ${{ matrix.os }} == "macos-10.15" ]]; then
+          wget http://www.mpich.org/static/downloads/3.3.2/mpich-3.3.2.tar.gz &> /dev/null
+          tar -xzf mpich-3.3.2.tar.gz
+          pushd mpich-3.3.2
+          ./configure --prefix=$HOME/mpich
+          make
+          sudo make install
+          popd
+        fi
+
+    - name: install-dependencies
+      run: |
+        echo "/home/runner/mpich/bin" >> $GITHUB_PATH
+        if [[ ${{ matrix.os }} == "ubuntu-20.04" ]]; then
+          sudo apt-get update
+          sudo apt-get install libmpich-dev
+          sudo apt-get install doxygen
+          sudo apt-get install pkg-config
+          sudo apt-get install libpng-dev
+          sudo apt-get install libjpeg-dev
+        elif [[ ${{ matrix.os }} == "macos-10.15" ]]; then
+          echo "$HOME/mpich/bin" >> $GITHUB_PATH
+          brew update
+          brew install doxygen
+          brew install mpich
+          brew install wget
+          if [[ ${{ matrix.compiler }} == "gcc-9" ]]; then
+            sudo ln -sf /usr/local/bin/gfortran-9 /usr/local/bin/gfortran
+          elif  [[ ${{ matrix.compiler }} == "gcc-10" ]]; then
+            sudo ln -sf /usr/local/bin/gfortran-10 /usr/local/bin/gfortran
+          fi
+        fi
+        python3 -m pip install gcovr
+
+    - name: cache-jasper
+      id: cache-jasper
+      uses: actions/cache@v2
+      with:
+        path: ~/jasper
+        key: jasper-${{ runner.os }}-2.0.22
+
+    - name: build-jasper
+      if: steps.cache-jasper.outputs.cache-hit != 'true'
+      run: |
+        set -x
+        pwd
+        wget https://github.com/jasper-software/jasper/archive/version-2.0.22.tar.gz &> /dev/null && ls -l
+        tar zxf version-2.0.22.tar.gz && ls -l
+        cd jasper-version-2.0.22
+        mkdir build-jasper && cd build-jasper
+        cmake .. -DCMAKE_INSTALL_PREFIX=~/jasper
+        make -j2
+        make install
+
+    - name: cache-netcdf
+      id: cache-netcdf
+      uses: actions/cache@v2
+      with:
+        path: ~/netcdf
+        key: netcdf-c-${{ runner.os }}-4.7.4-1
+
+    - name: build-hdf5
+      if: steps.cache-netcdf.outputs.cache-hit != 'true'
+      run: |
+        set -x
+        export CC=mpicc
+        wget https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-1.10/hdf5-1.10.7/src/hdf5-1.10.7.tar.gz &> /dev/null
+        tar -xzf hdf5-1.10.7.tar.gz
+        pushd hdf5-1.10.7
+        ./configure --prefix=${HOME}/netcdf --enable-parallel --disable-tools --disable-fortran --disable-cxx --enable-parallel-tests
+        make
+        sudo make install
+        popd
+
+    - name: build-netcdf-c
+      if: steps.cache-netcdf.outputs.cache-hit != 'true'
+      run: |
+        set -x
+        ls -l ${HOME}/netcdf
+        export CC=mpicc
+        export CPPFLAGS=-I${HOME}/netcdf/include
+        export LDFLAGS=-L${HOME}/netcdf/lib
+        wget https://www.unidata.ucar.edu/downloads/netcdf/ftp/netcdf-c-4.7.4.tar.gz &> /dev/null
+        tar -xzf netcdf-c-4.7.4.tar.gz
+        pushd netcdf-c-4.7.4
+        ./configure --prefix=${HOME}/netcdf --disable-dap --disable-utilities
+        make -j
+        sudo make install
+        popd
+
+    - name: build-netcdf-fortran
+      if: steps.cache-netcdf.outputs.cache-hit != 'true'
+      run: |
+        set -x
+        ls -l ${HOME}/netcdf
+        ls -l ${HOME}/netcdf/lib
+        export PATH="${HOME}/netcdf/bin:$PATH"
+        nc-config --libs --static
+        export CC=mpicc
+        export FC=mpifort
+        export CPPFLAGS=-I${HOME}/netcdf/include
+        export LDFLAGS=-L${HOME}/netcdf/lib
+        wget https://github.com/Unidata/netcdf-fortran/archive/v4.5.3.tar.gz &> /dev/null
+        tar -xzf v4.5.3.tar.gz
+        pushd netcdf-fortran-4.5.3
+        ./configure --prefix=${HOME}/netcdf
+        make -j
+        sudo make install
+        popd
+
+    - name: cache-esmf
+      id: cache-esmf
+      uses: actions/cache@v2
+      with:
+        path: ~/esmf
+        key: esmf-${{ runner.os }}-8.0.1-2-1
+
+    - name: build-esmf
+      if: steps.cache-esmf.outputs.cache-hit != 'true'
+      run: |
+        set -x
+        pushd ~
+        export ESMF_DIR=~/esmf-ESMF_8_0_1
+        wget https://github.com/esmf-org/esmf/archive/ESMF_8_0_1.tar.gz &> /dev/null && ls -l
+        tar zxf ESMF_8_0_1.tar.gz && ls -l
+        cd esmf-ESMF_8_0_1
+        export ESMF_COMM=mpich3
+        export ESMF_INSTALL_BINDIR=bin
+        export ESMF_INSTALL_LIBDIR=lib
+        export ESMF_INSTALL_MODDIR=mod
+        export ESMF_COMPILER=gfortran
+        export ESMF_INSTALL_PREFIX=~/esmf
+        export ESMF_NETCDF=split
+        export ESMF_NETCDF_INCLUDE=${HOME}/netcdf/include
+        export ESMF_NETCDF_LIBPATH=${HOME}/netcdf/lib
+        make -j2
+        make install
+
+    - name: checkout-nceplibs
+      uses: actions/checkout@v2
+      with:
+        repository: NOAA-EMC/NCEPLIBS
+        path: nceplibs
+
+    - name: get-git-hash
+      run: |
+        cd nceplibs
+        git rev-parse HEAD > hash.txt
+
+    - name: cache-nceplibs-develop
+      id: cache-nceplibs-develop
+      uses: actions/cache@v2
+      with:
+        path: ~/nceplibs
+        key: nceplibs-develop-${{ runner.os }}-${{ hashFiles('nceplibs/hash.txt') }}
+
+    - name: build-nceplibs
+      if: steps.cache-nceplibs-develop.outputs.cache-hit != 'true'
+      run: |
+        set -x
+        export ESMFMKFILE=~/esmf/lib/esmf.mk
+        cd nceplibs
+        mkdir build && cd build
+        cmake .. -DCMAKE_PREFIX_PATH='~;~/jasper' -DCMAKE_INSTALL_PREFIX='~/nceplibs' -DFLAT=ON
+        make -j2
+
+    - name: checkout-ufs-utils
+      uses: actions/checkout@v2
+      with: 
+        path: ufs_utils
+
+    - name: build-ufs-utils
+      run: |
+        export ESMFMKFILE=~/esmf/lib/esmf.mk
+        cd ufs_utils
+        mkdir build && cd build
+        export PATH="${HOME}/netcdf/bin:$PATH"
+        cmake .. -DCMAKE_PREFIX_PATH='~/jasper;~/nceplibs;~/netcdf' 
+        make -j2
+        make test
+