Rust data structures and parser for the Uniprot database(s).
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Oct 24, 2023 - Rust
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swissprot
Here are 9 public repositories matching this topic...
Interactive Protein Sequence Alignment Visualization
protein-structure edit-distance alignment safety protein-sequences uniprot blosum-matrix swissprot alphafold molstar
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Sep 21, 2026 - TypeScript
Description of work done at Merck pharmaceutical company in the summer of 2018 as a Computational Drug Discovery Intern at West Point, PA. Information excludes all proprietary information belonging to Merck & Co.
python computer-science research xml high-performance numpy drug-discovery proteomics publication lc-ms pharmacokinetics labkey scalable-data-analysis computational-proteomics drug-targets swissprot pharmaceuticals pharmacodynamics tkinter-python drug-development
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Mar 10, 2022 - Python
This repository contains the link for all Position Specific Scoring Matrices(PSSMs) of all protein in SwissProt(UniProtKB)
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Apr 9, 2022
Biomedical Few-shot Meta-learning Architectures with Classification Base Learners.
deep-learning meta-learning swissprot few-shot-learning tabula-muris fcnet classification-base-learners
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Dec 13, 2023 - Jupyter Notebook
Comparing Support Vector Machines (machine learning) and Position-specific Weight Matrix (statistical) methods for predicting Signal Peptides in eukaryotic Proteins Sequences.
machine-learning protein-sequences support-vector-machines binary-classification sequence-analysis swissprot signal-peptide
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Jan 13, 2025 - Jupyter Notebook
Bioinformatics capstone of the UoA DI 'Software Development for Algorithmic Problems' trilogy. Protein remote-homolog search on SwissProt-50k via ESM-2 embeddings + 6 ANN methods (brute, LSH, Hypercube, IVF-Flat, IVF-PQ, Neural LSH), benchmarked against BLAST.
bioinformatics university-project nearest-neighbor-search blast swissprot protein-search homolog-detection approximate-nearest-neighbor esm-2 neural-lsh
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May 10, 2026 - Python
Using BLAST and Transdecoder.
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Feb 7, 2023 - Shell
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