Feature map and function annotation of Proteins

R package to BLAST peptide sequences against each other and identify the minimal overlap of aligning regions.

Assigns short human readable descriptions to biological sequences or gene families using references. For this, prot-scriber consumes sequence similarity search results in tabular format (Blast or Diamond).

Parse consecutive matches in BLAST results.

Unraveling Evolutionary Relationship between Fungi Species

PredGenesGetPepts is an easy-to-use, beginner-friendly pipeline to call genes from fasta files, retrieve peptides and blasting them against a given protein database

This repository contains my implementation, that I built from scratch, of the heuristic blast algorithm used for DNA or protein sequence search against a massive database.

Modeling chromosomal gene location by protein composition

BLAST without Sys.Call()

Pipeline to get a protein's residues conservation JSD scores

Scripts to run benchmarks of BLAST and PLAST on a supercomputer

Using BLAST and Transdecoder.

A comprehensive workflow for de novo assembly of whole-genome shotgun sequencing data using Velvet, followed by BLAST searches to analyze assembled contigs.

Iterative Cluster Expansion BLAST. Captures very divergent homologous sequences via gradual search space expansion.

To classify plant ado-keto reductase-domain (PF00248) containing proteins via blastp search