hmmscan

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A Pure-Python parser of HMMER3 output

hmm bioinformatics filter biological-data-analysis hmmer hmmscan python-parser

Snakemake workflow to run transdecoder + trinotate

snakemake sqlite blast transcriptome trinity snakemake-workflows hmmscan transdecoder trinotate

Filter plant hydroxyproline rich glycoproteins

Making BUSCO HMMs useable in Anvi'o.

hmm hmmscan hmms busco anvio genome-completion

Using BLAST and Transdecoder.

bash bioinformatics blast trinity protein-domains hmmscan transdecoder swissprot blastp profile-hmm

dbPUP is a database of polyphenol utilization proteins (PUPs) that have been experimentally characterized to metabolize polyphenol substrates.

mysql python bootstrap flask hmmscan blask

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