spades

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PopovIILab / BatShotMetaFlow

🦇🧫📊Supplementary materials for study on bat gut shotgun metagenomics

phylogenetics beta-diversity microbial-communities blast spades differential-abundance-analyses fastq-files refseq alpha-diversity prokka quast kraken2 abricate lab-journal maaslin2 shotgun-metagenomics fastani humann3 virsorter2

Updated Oct 28, 2024
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The repository contains a comprehensive pipeline for genome assembly and quality assessment, designed for genomic data analysis. It integrates various bioinformatics tools for accurate genome assembly.

spades fastp quast nextflow-pipeline dynamic-command-construction-for-preprocessing scalability-across-computational-environments a-detailed-demonstration-of-naming-consistency trimming-combinations

Updated Jun 15, 2024
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spades

Here are 2 public repositories matching this topic...

PopovIILab / BatShotMetaFlow

shliamin / NGS-pipeline

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