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A comprehensive and customizable R package for microbiome analysis.
code to reproduce AIH results
ESKRIM is a reference-free tool that compares microbial richness in shotgun metagenomic samples by counting k-mers
Updated
Jul 25, 2024
Python
The following codes are focused on microbiome analysis, alpha, beta and relative abundance differences.
🦠Research project in Bioinformatics Institute 2023-2024
Updated
Aug 16, 2024
Jupyter Notebook
Microbiome Diversity Inspector - A platform for visual analysis of microbiome data.
Updated
Jun 17, 2018
JavaScript
Updated
May 14, 2019
Python
Updated
Dec 30, 2022
Jupyter Notebook
🦇🧫📊Supplementary materials for study on bat gut shotgun metagenomics
Updated
Oct 28, 2024
HTML
Take advantage of the adehabitat packages in R to determine ecological community richness: including alpha, beta, and gamma diversity!
Updated
May 19, 2024
HTML
Alpha, beta and gamma diversities are computed and visualized using formulas and using the R package vegetarian.
Updated
Dec 30, 2022
Jupyter Notebook
metaGEENOME is a 16S rRNA metagenomic analysis tool that encompasses nearly all steps of downstream analysis.
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