Snakemake pipeline for simulating shotgun metagenomic samples

Quantitative metagenomic alignment and taxonomic exact-matching

This repository contains scripts to run 9 different shotgun metagenomics profiling software on a rat tissue dataset as well as scripts for their downstream analysis (import into R, alpha/beta diversity, & differential abundant analysis).

This repository contains the code for ShotgunMG, a Nextflow bioinformatic pipeline for high-resolution metagenomics

Data Carpentry workshop organised at Utrecht University Medical Center on December 8-9, 2022.

Here we discuss strategies and workflows to analyse metagenomics datasets

Comparing 3 different metagenomics approaches with ONT's long read sequencing method

🦇🧫📊Supplementary materials for study on bat gut shotgun metagenomics