🧬 Toolkit for generating various numerical features of protein sequences
cancereffectsizeR: Estimate somatic mutation rates and quantify selection in cancer
R library for visualizing (social science) sequence data using ggplot2
R Package for Codon Usage Bias Analysis. Comprehensive documentation and tutorials are available at:
Mixtures of Exponential-Distance Models for Clustering Longitudinal Life-Course Sequences with Gating Covariates and Sampling Weights
R package for EDA and unsupervised learning of categorical sequence data
Analysis of localised heat-housing trajectories for neighbourhoods in England and Wales.
seqArchR: Identifying (promoter) sequence architectures de novo using NMF
Serine Recombinase-Assisted Genome Engineering - Relative Transcriptional Profiling (SAGE-RTP)
Code for the analysis and figures for the paper: Manguy J, Shields DC. Implications of kappa-casein evolutionary diversity for the self-assembly and aggregation of casein micelles. Royal Society Open Science. 2019 Oct 16;6(10):190939. Available from: https://royalsocietypublishing.org/doi/10.1098/rsos.190939
Project for NYU Multilevel Practicum and sequence study
Methods and data to reproduce the investigation on the adaptive trait found in the genes of the methane oxidation metabolic module of type Ia methanotrophs
Nucleotide sequence visualizer that converts raw input into checker-style tile plots for pattern analysis.
WINEPI Episode Mining algorithm for R based on Python implementation by duytri and nkmrtty
Sequence analysis of political trajectories over BRÉF data
🦇🦠Study on detection of α-CoV in bats of Rostov and Novosibirsk (Russia)
Repository for the paper "Dotplots und Sequenzanalysen als Untersuchungsinstrumente für Überlieferungsgemeinschaften am Beispiel von Priameln"
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