a multiple sequence alignment-trimming algorithm for accurate phylogenomic inference
a UNIX shell toolkit for processing and analyzing multiple sequence alignments and phylogenies
🧬 o r t h o g e n e 🧬✨✨✨✨✨✨✨ Interspecies gene mapping✨✨✨✨✨ 🦠 🔁 🌱 🔁 🌳 🔁 🍎 🔁 🍊 🔁 🪱 🔁 🪰 🔁 🐟 🔁 🦎 🔁 🐓 🔁 🦇 🔁 🐄 🔁 🐖 🔁 🐐 🔁 🐎 🔁 🐈 🔁 🐕 🔁 🐁 🔁 🐒 🔁 🦧 🔁 🦍 🔁 🏃♀️
HGTphyloDetect is a versatile toolbox to identify horizontal gene transfer (HGT) events combined with phylogenetic analysis.
a broadly applicable tool for automated gene identification and retrieval
a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees
PyPop: Python for Population Genomics
Create, modify and analyse phylogenetic trees in R
a versatile toolkit for processing and analyzing diverse types of sequence data
Evolutionary simulation where agents age, reproduce, and eat each other
Reproducible Quantitative Methods for EEB
A fast and scalable CUDA implementation to conduct highly parallelized evolutionary tests and viral simulations at scale. Related manuscripts: https://doi.org/10.1111/2041-210X.14168 and https://doi.org/10.1038/s41467-025-60988-8
Two-Tier Ensemble Aggregation Gene Co-expression Network (TEA-GCN): Capturing tissue/condition-specific co-expression from large transcriptomic datasets
Newick formatted (phylogenetic) trees
HARE: Genetic Feature Enrichment Analysis Pipeline
Software for analysing Many-Analysts' style data and generating the ManyEcoEvo project data
Open Software for Teaching Evolutionary Biology at Multiple Scales Through Virtual Inquiries
Source code for ManyEcoEvo Manuscript
Numerical model for life history evolution of age-structured populations
A Julia interface to the Paleobiology Database (PBDB) data service.
Add a description, image, and links to the evolutionary-biology topic page so that developers can more easily learn about it.
To associate your repository with the evolutionary-biology topic, visit your repo's landing page and select "manage topics."