1000 Genomes Project Metadata R Package

A fast and scalable CUDA implementation to conduct highly parallelized evolutionary tests and viral simulations at scale. Related manuscripts: https://doi.org/10.1111/2041-210X.14168 and https://doi.org/10.1038/s41467-025-60988-8

Bioinformatics workflow that identifies mutational overlaps using data from the 1000 genomes project

GTM and t-SNE classification and clustering of 1000 Genomes Project populations

📙 Explore 1000 Genomes variant data with JavaScript.

A PBWT-based light index for UK Biobank scale genotype data.

GWAS Pre-Processing Pipeline

Find risk snp in the LD region of GWAS snps by convolutional neural network

A pipeline utilizing PCA on 1000 genomes and WGS data from your own samples to determine or validate ancestry of an individual.

Predicting 1000 Genomes population using PCA and a random forest classifier

Pipeline with lots of user input for processing SNP data towards ADMIXTURE and/or imputation

Map 1000genomes location to a worldmap

This repository provides tools to train and evaluate the Genome-AC-GAN model for generating realistic artificial human genomes.

Extended Cross-Population (ExP) Heatmap

a Nextflow pipeline for generating imputation reference panels using 1000 Genomes and HGDP data to enhance variant calling in Blended Genome Exome sequencing

The main aim of this little project is to compare the European allele frequencies of the 1k genomes project with the gnomad frequencies.

Concordance Validation across Experiments

echoverse module: LD downloading and processing

A Python script that generate population genotype frequency file from 1000G data

An extendable parser for vcf files written in C++