Analyze your RNA sequencing data without writing a single line of code

Scalable RNA-seq analysis

SNP-free RNA editing Identification Toolkit

scripts for RNA-Seq analysis

群体遗传学分析中用到的script和skill等

Personalized Regression

A pipeline for structural clustering of RNA secondary structures

A Snakemake pipeline to go from fastq mRNA sequencing files to raw and normalised counts (usable for downstream EDA and differential analysis)

Code, documentation, and tutorials for the DGD model trained on bulk RNA-Seq data.

PyTorch Implementation of DeepSequence

Emending Alignment of Spliced Transcript Reads

A collection of Python modules equivalent to R ReQTL Toolkit aims to identify the association between expressed SNVs with their gene expression using RNA-sequencing data.

Notes and studies about single-cell RNA-Seq analysis

A Snakemake workflow for single copy gene, transposable elements and tRNA expression analysis

Genome-wide investigation of non-canonical splice sites

Repository for Pachter Lab Biophysics

Accurate, easy and integrated suit to compare RNA samples with different degradation levels, quantify decay rates per-transcript and correct for degradation-induced artifacts in differential gene/transcript comparisons

Collective Snakemake workflows for easy and reproducible NGS data analysis.

PROFILE RNA-seq binarization technique.

PABLOG: a Primer Analysis tool using a Bee-Like approach on Orthologous Genes