Analyze your RNA sequencing data without writing a single line of code

Scalable RNA-seq analysis

SNP-free RNA editing Identification Toolkit

scripts for RNA-Seq analysis

群体遗传学分析中用到的script和skill等

A Snakemake pipeline to go from fastq mRNA sequencing files to raw and normalised counts (usable for downstream EDA and differential analysis)

Personalized Regression

A pipeline for structural clustering of RNA secondary structures

Code, documentation, and tutorials for the DGD model trained on bulk RNA-Seq data.

PyTorch Implementation of DeepSequence

Emending Alignment of Spliced Transcript Reads

A collection of Python modules equivalent to R ReQTL Toolkit aims to identify the association between expressed SNVs with their gene expression using RNA-sequencing data.

Notes and studies about single-cell RNA-Seq analysis

A Snakemake workflow for single copy gene, transposable elements and tRNA expression analysis

Repository for Pachter Lab Biophysics

Genome-wide investigation of non-canonical splice sites

Accurate, easy and integrated suit to compare RNA samples with different degradation levels, quantify decay rates per-transcript and correct for degradation-induced artifacts in differential gene/transcript comparisons

Collective Snakemake workflows for easy and reproducible NGS data analysis.

PROFILE RNA-seq binarization technique.

PABLOG: a Primer Analysis tool using a Bee-Like approach on Orthologous Genes