A Snakemake powered pipeline developed to perform population structure and admixture analysis given multiple Variant Call Format datasets. This has been developed in partial fulfilment of a MSc in Bioinformatics at the University of Pretoria by Graeme Ford.

Mutual nearest neighbor graphs for population structure inference and visualization 🐙

R implementation of the BAPS software for Bayesian Analysis of Population Structure

R package and web app for spatial visualisation of admixture on a projected map

Crowdfunding Data Analysis

Imputation and Admixture for lcWGS in one goal

Repository for "Hybridization and inbreeding affect the survival of a critically endangered coral"

strataG is a toolkit for haploid sequence and multilocus genetic data summaries, and analyses of population structure.

Nextflow pipeline for analyzing empirical WGS data for the effect of positive selection on IBD-based inference

Nextflow pipeline to assess the impact of positive selection on Identity by Descent (IBD)-based inferences, utilizing population genetic simulations and true IBD inferences.

R is nowadays probably the most powerful tool for calculations of all kinds. There are plenty of modules available for work with molecular data. Those will be introduced during the course.

Collection of materials for teaching about autoencoders

Fine-scale genetic structure in South Western Cameroon

An R package to analyse and visualise admixture proportions from STRUCTURE, fastSTRUCTURE, TESS, ADMIXTURE etc.

Genetic Ancestry

An integrated pipeline for analysis and visualization of Population Structure and Relatedness based on genome-wide genetic variant data

A comprehensive tutorial about GWAS and PRS

STAT488 - Multivariate Statistics final project at Loyola University Chicago

BIOI500 - Advanced Bioinformatics final project at Loyola University Chicago.