Estimating tumor fraction in cell-free DNA from ultra-low-pass whole genome sequencing.
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Mar 20, 2024 - R
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low-coverage-sequencing
Here are 10 public repositories matching this topic...
Imputation workflow for low coverage whole genome sequencing data
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Jul 18, 2024 - Python
Genotype imputation pipelines for the UK Biobank Research Analysis Platform
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Nov 9, 2023 - Shell
The repo was not under development. Check out angsd toolkit for low depth data analyses.
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Sep 2, 2020 - C++
Two Nextflow pipelines for mapping and imputation of non-human samples sequenced at low-coverage.
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Aug 10, 2021 - Nextflow
Supporting data for "Low-coverage whole genome sequencing for a highly selective cohort of severe COVID-19 patients"
bioinformatics
ngs
bioinformatics-pipeline
glimpse
ngs-pipeline
low-coverage-sequencing
genotype-imputation
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May 12, 2024 - Python
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Jan 13, 2022 - C
Imputation and Admixture for lcWGS in one goal
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Aug 23, 2024 - C++
LCVCFtools is a program designed for working with VCF files generated from low-coverage whole genome sequencing
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Sep 22, 2022 - C++
Asses the validity of imputation of your low-coverage samples
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Feb 14, 2023 - R
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