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@Tuks-ICMM

Institute for Cellular and Molecular Medicine

The Institute for Cellular and Molecular Medicine (ICMM) of the University of Pretoria is addressing critical elements contributing to disease burden.

Welcome to the Institute for Cellular and Molecular Medicine


The Institute for Cellular and Molecular Medicine keenly supports the University of Pretoria’s objective of improving the quality of scientific research and raising the research profile of the University at all levels.

The Institute has a solid research base in human health sciences and is entering into a phase of rapid growth as it responds to the heavy national and regional burden of communicable and non-communicable diseases. Several cross-cutting disciplines have been defined in an effort to focus the Institute’s activities. The disciplines concerned include genetics/genomics, cell-based therapy, the neurosciences, bio-entrepreneurship and the regulatory (legislative) environment.

You can view our full site at: https://www.up.ac.za/institute-for-cellular-and-molecular-medicine

Popular repositories Loading

  1. Pharmacogenetic-Analysis-Pipeline Pharmacogenetic-Analysis-Pipeline Public

    A Snakemake powered pipeline developed to perform variant-effect-prediction and frequency analysis given multiple Variant Call Format datasets. This has been developed in partial fulfilment of a MS…

    Jupyter Notebook 1

  2. .github .github Public

    A *special* repository to manage our GitHub organisations README

  3. VCF-Validation-Workflow VCF-Validation-Workflow Public

    A Snakemake powered pipeline developed to perform quality control and data preparation given individual Variant Call Format datasets. This has been developed in partial fulfilment of a MSc in Bioin…

    Python

  4. Population-Structure-Workflow Population-Structure-Workflow Public

    A Snakemake powered pipeline developed to perform population structure and admixture analysis given multiple Variant Call Format datasets. This has been developed in partial fulfilment of a MSc in …

    Python

  5. HIE_Genetic_data_analysis HIE_Genetic_data_analysis Public

    This repository contains scripts for the analysis of genetic variant data on genes associated with hypoxic ischemic encephalopathy (HIE). This work was completed in partial fulfillment of an MSc in…

    Jupyter Notebook

Repositories

Showing 5 of 5 repositories
  • Pharmacogenetic-Analysis-Pipeline Public

    A Snakemake powered pipeline developed to perform variant-effect-prediction and frequency analysis given multiple Variant Call Format datasets. This has been developed in partial fulfilment of a MSc in Bioinformatics at the University of Pretoria by Graeme Ford.

    Tuks-ICMM/Pharmacogenetic-Analysis-Pipeline’s past year of commit activity
    Jupyter Notebook 0 CC-BY-4.0 1 13 5 Updated Nov 9, 2024
  • Population-Structure-Workflow Public

    A Snakemake powered pipeline developed to perform population structure and admixture analysis given multiple Variant Call Format datasets. This has been developed in partial fulfilment of a MSc in Bioinformatics at the University of Pretoria by Graeme Ford.

    Tuks-ICMM/Population-Structure-Workflow’s past year of commit activity
    Python 0 0 0 0 Updated Nov 9, 2024
  • VCF-Validation-Workflow Public

    A Snakemake powered pipeline developed to perform quality control and data preparation given individual Variant Call Format datasets. This has been developed in partial fulfilment of a MSc in Bioinformatics at the University of Pretoria by Graeme Ford.

    Tuks-ICMM/VCF-Validation-Workflow’s past year of commit activity
    Python 0 0 0 0 Updated Nov 4, 2024
  • HIE_Genetic_data_analysis Public

    This repository contains scripts for the analysis of genetic variant data on genes associated with hypoxic ischemic encephalopathy (HIE). This work was completed in partial fulfillment of an MSc in Medical Immunology at the University of Pretoria by Megan A Holborn.

    Tuks-ICMM/HIE_Genetic_data_analysis’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Aug 26, 2024
  • .github Public

    A *special* repository to manage our GitHub organisations README

    Tuks-ICMM/.github’s past year of commit activity
    0 0 0 0 Updated Feb 23, 2022

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