In this article, we introduce Mycorrhiza, a machine learning approach for the genotype assignment problem. Our algorithm makes use of phylogenetic networks to engineer features that encode the evolutionary relationships among samples.

Data analysis on natural movement of the population in Romania

Imputation and Admixture for lcWGS in one goal

Nextflow pipeline for analyzing empirical WGS data for the effect of positive selection on IBD-based inference

GWAS on rice RNA seq data, features use of statgenGWAS, and experimentation with different methods of pop. structure control

Repository for paper looking at phenotypic differences among F1 and F2 oysters from 3 populations in Puget Sound, WA.

Repository for "Hybridization and inbreeding affect the survival of a critically endangered coral"

Binary trait Resampling method Adjusting for Sample Structure

Plague Global Phylogeny Manuscript

vk.com community members sex and age distribution (population pyramid)

STRUCTURE and ROLLOFF reimplementations for CS 4775 (Computational Genetics and Genomics)

BIOI500 - Advanced Bioinformatics final project at Loyola University Chicago.

Collection of materials for teaching about autoencoders

Crowdfunding Data Analysis

Interactive interface for pophelper using shiny web framework.

Nextflow pipeline to assess the impact of positive selection on Identity by Descent (IBD)-based inferences, utilizing population genetic simulations and true IBD inferences.

Genetic Ancestry

A Snakemake powered pipeline developed to perform population structure and admixture analysis given multiple Variant Call Format datasets. This has been developed in partial fulfilment of a MSc in Bioinformatics at the University of Pretoria by Graeme Ford.