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phenotypes

Here are 17 public repositories matching this topic...

monarch-initiative / biolink-api

API for linked biological knowledge

python api bioinformatics gene swagger ontologies phenotypes model-organisms

Updated Apr 26, 2022
Python

mims-harvard / ProCyon

ProCyon: A multimodal foundation model for protein phenotypes

biology proteins phenotypes foundation-models generative-ai generalist-model biomedical-ai

Updated Nov 25, 2025
Python

aldro61 / kover

Learn interpretable computational phenotyping models from k-merized genomic data

machine-learning genomics k-mer phenotypes biomarker-discovery

Updated Aug 9, 2022
Python

ArcInstitute / ScreenPro2

Flexible analysis of high-content CRISPR screening

crispr-analysis crispr phenotypes crispr-cas9 functional-genomics ngs-analysis perturbation-screen sequencing-data crispr-cas12

Updated Aug 21, 2025
Python

RomanoLab / comptox_ai

ComptoxAI - An artificial Intelligence toolkit for computational toxicology

data ai neo4j ontology graph-database phenotypes diseases graph-machine-learning

Updated Apr 15, 2025
Python

lasigeBioTM / PGR

A Silver Standard Corpus of Human Phenotype-Gene Relations

genes datasets phenotypes relation-extraction biomedical-text-mining

Updated Oct 6, 2022
Python

cmungall / linkml-phenopackets

EXPERIMENTAL rendering of phenopackets in linkml

metadata rdf phenotypes monarchinitiative phenopackets semweb human-phenotype-ontology linkml

Updated Jul 3, 2024
Python

chopdgd / django-phenotype-ontologies

Django app for parsing/loading Phenotype ontologies (HPO, MONDO, OncoTree, etc)

django bioinformatics ontologies phenotypes

Updated Feb 4, 2026
Python

bio2bel / mesh

A Bio2BEL package for the Medical Subject Headings (MeSH; https://meshb.nlm.nih.gov)

chemistry mesh terminology phenotypes biological-expression-language

Updated Aug 2, 2019
Python

zietzm / phenotype_standardization

https://github.com/zietzm/phenotype_standardization/wiki

phenotypes medical-informatics pharmacovigilance

Updated Jul 1, 2020
Python

monarch-initiative / phenotype2phenopacket

Phenotype2Phenopacket is a command-line tool that converts a phenotype annotation into GA4GH Phenopackets, facilitating standardised phenotypic data representation.

phenotypes monarchinitiative phenopackets

Updated Jun 30, 2025
Python

bio2bel / mir2disease

A Bio2BEL package for mir2disease (http://www.mir2disease.org)

systems-biology phenotypes biological-expression-language mirna mir2disease

Updated Apr 25, 2018
Python

GameDisplayer / TER

Analyse des phénotypes dans les réseaux de régulation génétique: étude de cas du métabolisme énergétique dans le cancer du pancréas.

python phenotypes boolean-network

Updated Jun 17, 2020
Python

jorgeMFS / PhenoQC

PhenoQC is a lightweight, efficient, and user-friendly toolkit designed to perform comprehensive quality control (QC) on phenotypic datasets. It ensures that data adheres to standardized formats, maintains consistency, and is harmonized with recognized ontologies.

imputation phenotypes ontology-matching bias-detection validation-tool

Updated Aug 15, 2025
Python

leylabmpi / traitar3

machine-learning bacteria phenotypes genomes archaea

Updated Aug 9, 2022
Python

bio2bel / hp

A Bio2BEL package for converting the Human Phenotype Ontology (HP) to BEL

ontology terminology phenotypes biological-expression-language

Updated Mar 10, 2019
Python

amir-not2005 / face_phenotype_identifier

Face recognition based phenotype identifier | Data processed from http://humanphenotypes.net/

scraper phenotypes face-recognition-python

Updated Oct 3, 2024
Python

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