ICML 2026 autonomous AI agent for end-to-end spatial proteomics analysis, with SP-Bench for agentic multiplexed-imaging workflows.

ProCyon: A multimodal foundation model for protein phenotypes

BioContextAI Knowledgebase MCP server for biomedical agentic AI

A PMC ID in. Clean, loss-aware article JSON out. Parse PubMed Central and JATS XML for biomedical AI, RAG, search, and literature pipelines.

The BioContextAI Registry for biomedical MCP servers

Cookiecutter template for MCP server development with FastMCP

This repository contains a deep learning-based cancer type prediction system using a trained convolutional neural network (CNN). The model is deployed using Streamlit, allowing users to upload medical images and receive predictions with a probability distribution displayed in a pie chart.

Biomedical Artificial Intelligence

🩺 AstraMed: A Clinical Risk Intelligence Platform. Powered by SOTA Ensemble ML & BioMistral-7B for predictive medical analytics and explainable risk scoring.

Breast ultrasound image segmentation app using a U-Net with ResNet50V2 backbone, featuring an interactive Gradio demo and AI-based lesion detection.

Lab website

Lightweight CNN with Attention for Heart Sound Classification

🩺 RAGnosis — An AI-powered clinical reasoning assistant that retrieves real diagnostic notes (from MIMIC-IV-Ext-DiReCT) and generates explainable medical insights using Mistral-7B & FAISS, wrapped in a clean Gradio UI. ⚡ GPU-ready, explainable, and open-source.

A modular agentic AI software system demonstrating LLM reasoning, tool orchestration, and retrieval-augmented generation (RAG) using Python and the OpenAI Responses API.

Deep learning system that interprets brain signals from EEG/fMRI to control devices, predict neurological disorders, and enable brain-computer interfaces.

This project builds machine learning models to automatically detect and classify protein complexes in cryo-electron tomography (cryoET) images, enabling scalable analysis of cellular structures and supporting advanced biological and medical research.

Local mitochondrial research assistant: 12-agent RAG over Neo4j KG with PubMed, Semantic Scholar, Europe PMC and bioRxiv search, PDF ingestion, and 3D knowledge graph explorer.

This repository contains a deep learning-based cancer type prediction system using a trained convolutional neural network (CNN). The model is deployed using Streamlit, allowing users to upload medical images and receive predictions with a probability distribution displayed in a pie chart.

AI-powered biomedical evidence intelligence platform that transforms PubMed literature into structured claims, knowledge graphs, research briefs, and evidence-grounded AI insights.

Exploring classical vs. quantum ML for Parkinson’s diagnosis using Qiskit, PennyLane, and IBM Quantum hardware. Alexandria Quantum Hackathon 2nd place project.