ArcInstitute / ScreenPro2 Star 34 Code Issues Pull requests Flexible analysis of high-content CRISPR screening crispr-analysis crispr phenotypes crispr-cas9 functional-genomics ngs-analysis perturbation-screen sequencing-data crispr-cas12 Updated Sep 14, 2026 Python
ArcInstitute / gpudge Star 6 Code Issues Pull requests Lightweight GPU-only Mann–Whitney U differential expression for single-cell CRISPR perturbation screens python bioinformatics gpu cuda crispr single-cell differential-expression mann-whitney wilcoxon perturbation-screen Updated Aug 20, 2026 Python
mancusolab / perturbvi Star 3 Code Issues Pull requests Perturbvi is a scalable approach to infer regulatory modules in large-scale single-cell pertubation screen data. single-cell variational-inference jax perturbation-screen Updated Sep 21, 2026 Python
hesmon / APSiC Star 0 Code Issues Pull requests APSiC: Analysis of Perturbation Screens for the Identification of Novel Cancer Genes computational-biology perturbation-screen cancer-dependencies Updated Jul 28, 2021 R
Hon-lab / Breast_cancer_perturbation Star 0 Code Issues Pull requests Enhancer regulatory networks globally connect non-coding breast cancer loci to cancer genes single-cell-genomics perturbation-screen single-cell-crispr-screening Updated Jan 17, 2025 Jupyter Notebook