Code examples of fast and simple k-mer counters for tutorial purposes
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Mar 10, 2020 - C++
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k-mer-counting
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Estimating k-mer coverage histogram of genomics data
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Dec 13, 2023 - C++
fast and comprehensive k-mer counting package
hashing
bioinformatics
rcpp
genomics
feature-extraction
protein-sequences
ngram
ngrams
kmer
k-mer
feature-engineering
hashing-algorithms
k-mer-counting
kmer-frequency-count
kmer-counting
rpackage
bioinformatics-tool
kmers
rcppparallel
dna-processing
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Sep 27, 2021 - C++
K-mer indexing and querying in RNA-Seq data
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Jan 23, 2019 - C++
A project submitted as the requirement of the course CSE 549 (Computational Biology), titled as "Efficient Parallelization for KmerEstimate: A Streaming Algorithm for Estimating k-mer Counts with Optimal Space Usage". Original serial algorithm available at github.com/srbehera11/KmerEstimate.
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Dec 10, 2018 - C++
Assignments in C++
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Jun 27, 2018 - C++
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