Transformer-based sequence correction method for genome assembly polishing
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Mar 11, 2025 - Jupyter Notebook
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human-genome
Here are 12 public repositories matching this topic...
Raw dump of Kenneth Reitz's DNA Sequence, Ancestry, Genealogy, &c.
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Sep 6, 2025 - HTML
How compressible is a human genome sequence?
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May 15, 2024 - Shell
A Python tool to calculate penetrance tables for high-order epistasis models
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Apr 19, 2022 - Python
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May 18, 2022
A streamlined pipeline for germline variant calling on chromosome 11 using GATK. This repository includes workflows for data preprocessing, variant discovery, and annotation, with a focus on understanding genetic variations linked to disease-associated genes.
bioinformatics snps vcf gatk variant-calling bam population-genetics samtools bwa genome-analysis indels bcftools variant-annotation reference-genome exome-sequencing 1000genomes snpeff haplotypecaller human-genome gatk4-haplotypecaller
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Nov 26, 2024 - R
A repository containing all the file projects that I have for the Bioinformatics 3 (COMP 4312b) course.
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Jan 11, 2023
Interactive web viewer for TF ChIP-seq binding programs at canonical protein-coding TSSs (Ensembl GRCh38.114). Streamlit + Plotly + DuckDB; ~1,300 TFs × ~19,700 TSSs; NMF programs/archetypes, GTEx + DepMap overlays, atlas-wide TF×TF network.
bioinformatics transcription-factors genomics plotly gene-regulation gtex chip-seq promoter nmf depmap human-genome streamlit regulatory-genomics duckdb chip-atlas
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May 22, 2026 - Python
Program Structures and Algorithms GENETIC ALGORITHM
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Apr 20, 2019 - Java
A collection of Jupyter notebooks for basic analysis of the data from the "BeatAML" study by Tyner et al. (2018)
python r jupyter jupyter-notebook pandas python3 ensembl deseq2 biomart cancer-research interactive-data-analysis acute-myeloid-leukemia human-genome human-genomics
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Jul 19, 2023 - Jupyter Notebook
Human genome mapping workflow demonstrating large-scale sequence alignment with BWA and quality assessment of high-throughput sequencing data.
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Jan 27, 2026 - HTML
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