A declarative interactive genomics visualization library for Python.

The Refinery Platform is a data management, analysis and visualization system for bioinformatics and computational biology applications. The platforms consists of three major components: a data repository with rich metadata capabilities, a workflow engine based on the popular Galaxy system, and visualization tools to support the exploration and …

Python bindings to and Jupyter Notebook+Lab integration for the HiGlass viewer

Python API and Jupyter widget for Vitessce

Clodius is a tool for breaking up large data sets into smaller tiles that can subsequently be displayed using an appropriate viewer.

A utility script to manage local docker instances of HiGlass

Server component for HiGlass that manages and serves tiled data

Configure Vitessce using existing Scverse plotting APIs

Given a Frictionless Table Schema, generate an Excel template with input validation

HuBMAP data submission guidelines, and tools which check that submissions adhere to those guidelines.

Utils for loading HuBMAP data formats

Python bindings to the esbuild Transform API

Registry for Visualization Tool Annotations that are compatible with Refinery (https://github.com/refinery-platform/refinery-platform)

Visualization of 3D genome models in notebooks

A simple experiment to serve content of tabular files through a REST API with Django and pandas.

Python client for the Cells API

Creates a Docker image that can create tiles from OME-TIFF files

Convert REFI-QDA .qdpx file into JSON and PNG files

Python implementation of miQC: probablistic quality control of scRNA-seq data

Given HuBMAP Dataset JSON, creates a Vitessce configuration