Python API and Jupyter widget for Vitessce

Given a Frictionless Table Schema, generate an Excel template with input validation

HuBMAP data submission guidelines, and tools which check that submissions adhere to those guidelines.

Utils for loading HuBMAP data formats

Python bindings to the esbuild Transform API

Convert REFI-QDA .qdpx file into JSON and PNG files

Python implementation of miQC: probablistic quality control of scRNA-seq data

Python client for the Cells API

Given HuBMAP Dataset JSON, creates a Vitessce configuration

Docker containers to pre-process data for visualization in the portal