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@hubmapconsortium

HuBMAP Consortium

This is the GitHub organization for repos related to the work of the HuBMAP Consortium.

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  1. entity-api entity-api Public

    A set of web service calls to return information about HuBMAP entities

    Python 3 1

  2. gateway gateway Public

    Python

  3. search-api search-api Public

    HuBMAP search service and associated pieces to create an index

    Python 2 2

  4. portal-ui portal-ui Public

    HuBMAP Data Portal front end

    TypeScript 12 2

  5. ingest-ui ingest-ui Public

    HuBMAP Data Ingest Portal

    JavaScript 4

  6. ingest-pipeline ingest-pipeline Public

    Data ingest pipeline(s) for QA/metadata etl/post-processing

    Python 4 5

Repositories

Showing 10 of 175 repositories
  • xenium-pipeline Public
    hubmapconsortium/xenium-pipeline’s past year of commit activity
    Common Workflow Language 0 0 0 0 Updated Nov 14, 2024
  • ingest-pipeline Public

    Data ingest pipeline(s) for QA/metadata etl/post-processing

    hubmapconsortium/ingest-pipeline’s past year of commit activity
    Python 4 MIT 5 79 16 Updated Nov 15, 2024
  • hra-ui Public

    HRA UIs Monorepo (includes HRA Portal, EUI, RUI, ASCT+B Reporter, and more)

    hubmapconsortium/hra-ui’s past year of commit activity
    TypeScript 4 MIT 2 105 6 Updated Nov 14, 2024
  • ingest-validation-tests Public
    hubmapconsortium/ingest-validation-tests’s past year of commit activity
    Python 0 0 4 1 Updated Nov 15, 2024
  • soft-assay-rules Public

    Rules for "soft" assay classification, and tools to generate and test them.

    hubmapconsortium/soft-assay-rules’s past year of commit activity
    Python 0 MIT 0 0 2 Updated Nov 14, 2024
  • hra-do-processor Public

    hra-do-processor: HRA Digital Objects Processor

    hubmapconsortium/hra-do-processor’s past year of commit activity
    JavaScript 1 MIT 0 4 1 Updated Nov 14, 2024
  • multiome-data-products Public
    hubmapconsortium/multiome-data-products’s past year of commit activity
    Python 0 0 0 0 Updated Nov 14, 2024
  • portal-ui Public

    HuBMAP Data Portal front end

    hubmapconsortium/portal-ui’s past year of commit activity
    TypeScript 12 MIT 2 201 31 Updated Nov 14, 2024
  • kaggle-2-segmentation Public
    hubmapconsortium/kaggle-2-segmentation’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Nov 14, 2024
  • ingest-validation-tools Public

    HuBMAP data submission guidelines, and tools which check that submissions adhere to those guidelines.

    hubmapconsortium/ingest-validation-tools’s past year of commit activity
    Python 8 MIT 18 41 8 Updated Nov 14, 2024
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