A genome visualization python package for comparative genomics
Python programs for processing GFF3 files
An efficient way to convert gff3 annotation files into EMBL format ready to submit.
Convert sequence IDs between ucsc/refseq/genbank
A Python package for Biopython that gives feature annotations from GenBank records a new and better life
JSON-based FON (Feature Object Notation) format and tools to simplify genomic annotations usage
Genome annotation data analysis and management implemented in pure Python
Gff-toolbox is a toolbox of commands that enables one to get the gist of their GFF annotation files, as well as to analyse them in different ways.
gffy — A fast GFF statistics extractor. Well, because the world needed another one.
TIGRE is a Python CLI for large scale extraction of intergenic regions.
A tool to aggregate and load TB data to Neo4j
Parse, manipulate and save GFF3 genome annotation files.
A lightweight Windows x64 GUI app that fliters a vcf file to contain only coding regions and adds coding sequence identifier information
A unified Python CLI for 30 bioinformatics file-format conversions (VCF, GFF3, GTF, BED, GenBank, FASTA, FASTQ, BAM, EIGENSTRAT, PLINK, MAF, MUMmer, HMMER, Newick) with consistent flags, batch mode, and a published Stage 1 benchmark vs convertf, plink2, AGAT, gffread, UCSC, EMBOSS, pyhmmer.
Converts the string output of BPROM, a promoter prediction software tool, to the GFF3 file format. Used in a CPT Galaxy phage genomics workflow
read VCF and select synonymous or non-synonymous coding variants
💻 Interconverting FASTA, GFF, and CSV.
To associate your repository with the gff3 topic, visit your repo's landing page and select "manage topics."