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@NBISweden

NBIS - National Bioinformatics Infrastructure Sweden

NBIS is a distributed national bioinformatics infrastructure, supporting life sciences in Sweden.

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  1. MrBayes MrBayes Public

    MrBayes is a program for Bayesian inference and model choice across a wide range of phylogenetic and evolutionary models. For documentation and downloading the program, please see the home page:

    C 233 79

  2. EMBLmyGFF3 EMBLmyGFF3 Public

    An efficient way to convert gff3 annotation files into EMBL format ready to submit.

    Python 59 16

  3. development-guidelines development-guidelines Public

    Development guidlines for software within NBIS.

    17 8

  4. excelerate-scRNAseq excelerate-scRNAseq Public

    Single RNA-seq data analysis with R (Finland, May, 2019)

    HTML 216 107

  5. GAAS GAAS Public

    Genome Assembly and Annotation Service code

    Perl 199 46

  6. IgDiscover-legacy IgDiscover-legacy Public archive

    Analyze antibody repertoires and discover new V genes from high-throughput sequencing reads

    Python 17 10

Repositories

Showing 10 of 292 repositories
  • workshop-epigenomics-RTDs Public

    workshop website on readthedocs

    NBISweden/workshop-epigenomics-RTDs’s past year of commit activity
    17 14 0 0 Updated Sep 16, 2024
  • workshop_omics_integration Public

    Workshop in omics integration and systems biology

    NBISweden/workshop_omics_integration’s past year of commit activity
    HTML 59 GPL-3.0 35 9 1 Updated Sep 13, 2024
  • sda-cli Public

    User command line interface for the SDA

    NBISweden/sda-cli’s past year of commit activity
    Go 5 AGPL-3.0 1 35 (1 issue needs help) 2 Updated Sep 13, 2024
  • data-submission-documentation Public

    Documentation for data submissions from life science research in public repositories

    NBISweden/data-submission-documentation’s past year of commit activity
    Shell 3 0 0 2 Updated Sep 13, 2024
  • module-versioning-dm-practices Public
    NBISweden/module-versioning-dm-practices’s past year of commit activity
    Ruby 0 0 0 0 Updated Sep 13, 2024
  • module-organising-data-dm-practices Public
    NBISweden/module-organising-data-dm-practices’s past year of commit activity
    Ruby 0 2 0 0 Updated Sep 13, 2024
  • PLP_Design_Portal Public

    This repository contains a package to create padlock probes that target RNA directly and for developing a user-friendly.portal

    NBISweden/PLP_Design_Portal’s past year of commit activity
    0 0 11 0 Updated Sep 12, 2024
  • Sloppymerase Public

    Find single-stranded DNA breaks with an error-prone DNA polymerase

    NBISweden/Sloppymerase’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Sep 12, 2024
  • GenErode Public

    GitHub repository for GenErode, a Snakemake pipeline for the analysis of whole-genome sequencing data from historical and modern samples to study patterns of genome erosion.

    NBISweden/GenErode’s past year of commit activity
    Python 23 GPL-3.0 7 20 0 Updated Sep 12, 2024
  • MrBayes Public

    MrBayes is a program for Bayesian inference and model choice across a wide range of phylogenetic and evolutionary models. For documentation and downloading the program, please see the home page:

    NBISweden/MrBayes’s past year of commit activity
    C 233 GPL-3.0 79 71 1 Updated Sep 12, 2024
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