tiara – a tool for DNA sequence classification
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Mar 2, 2024 - Python
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eukaryotes
Here are 9 public repositories matching this topic...
A machine learning model for the prediction of optimal growth temperature of microorganisms and enzyme catalytic optima
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Sep 30, 2020 - Python
Eukfinder: A pipeline to retrieve microbial eukaryote genomes from metagenomic sequencing data
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Apr 22, 2025 - Python
REcovery of eukaryotic genomes using contrastive learning. A specialized metagenomic binning tool designed for recovering high-quality eukaryotic genomes from mixed prokaryotic-eukaryotic samples.
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Dec 12, 2025 - Python
SCGid, a consensus approach to contig filtering and genome prediction from single-cell sequencing libraries
bioinformatics python3 bioinformatics-pipeline fungi genome-assembly-evaluation bioinformatics-algorithms single-cell-genomics eukaryotes bioinformatics-tool
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May 9, 2024 - Python
ASAFind latest version, with options for graphical output and ppc protein prediction
bioinformatics genome protein sequence algae chloroplast mitochondria eukaryotes organelle plastid signal-peptide protein-translocation transit-peptide protein-targeting
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Jun 3, 2025 - Python
A library to get information on organisms and UniProt identifiers. This includes growth temperature, growth ph, pfam domains, taxonomic lineage.
bioinformatics phylogenetics microbiology bacteria eukaryotes archaea taxonomic-identifiers taxonomic-lineages
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Jun 11, 2024 - Python
V. M. Gumerov, E. P. Andrianova, M. A. Matilla, Karen M. Page, Elizabet Monteagudo-Cascales, A. C. Dolphin, T. Krell, I. B. Zhulin (2022). Amino acid sensor conserved from bacteria to humans.
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Jul 25, 2023 - Python
Global standardised soil eukaryome dataset
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Dec 10, 2025 - Python
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