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EngqvistLab

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  1. Tome Tome Public

    A machine learning model for the prediction of optimal growth temperature of microorganisms and enzyme catalytic optima

    Python 52 15

  2. fetch_microbial_growth_temperatures fetch_microbial_growth_temperatures Public

    Code to go with the https://doi.org/10.1101/271569 publication. Downloads html pages from culture-collection centers and mines these for growth temperature data.

    Python 6 1

  3. UniRep50 UniRep50 Public

    A slighlty modified version of the UniRep model

    Jupyter Notebook 5 2

  4. DeepET_reps DeepET_reps Public

    An installable library to get DeepET representations.

    Jupyter Notebook 3 2

  5. orgtools orgtools Public

    A library to get information on organisms and UniProt identifiers. This includes growth temperature, growth ph, pfam domains, taxonomic lineage.

    Python 2

  6. cheminformatics cheminformatics Public

    Jupyter Notebook 2

Repositories

Showing 10 of 15 repositories
  • orgtools Public

    A library to get information on organisms and UniProt identifiers. This includes growth temperature, growth ph, pfam domains, taxonomic lineage.

    EngqvistLab/orgtools’s past year of commit activity
    Python 2 GPL-3.0 0 0 0 Updated Jun 11, 2024
  • cheminformatics Public
    EngqvistLab/cheminformatics’s past year of commit activity
    Jupyter Notebook 2 GPL-3.0 0 0 2 Updated Aug 15, 2023
  • UniRep50 Public

    A slighlty modified version of the UniRep model

    EngqvistLab/UniRep50’s past year of commit activity
    Jupyter Notebook 5 GPL-3.0 2 0 2 Updated Mar 24, 2023
  • DeepET_reps Public

    An installable library to get DeepET representations.

    EngqvistLab/DeepET_reps’s past year of commit activity
    Jupyter Notebook 3 GPL-3.0 2 1 0 Updated Mar 13, 2022
  • analyze_1.1.3.15 Public

    Code to analyze the 1.1.3.15 experimental data

    EngqvistLab/analyze_1.1.3.15’s past year of commit activity
    HTML 1 GPL-3.0 0 0 0 Updated Apr 9, 2021
  • yeast_xylanase Public

    A bioinformatic analysis was carried out with the goal of identifying carbohydrate-active enzymes in 332 published yeast genomes.

    EngqvistLab/yeast_xylanase’s past year of commit activity
    HTML 0 GPL-3.0 0 0 0 Updated Feb 19, 2021
  • brenparse Public

    A library for parsing out data from the BRENDA database html files

    EngqvistLab/brenparse’s past year of commit activity
    HTML 1 GPL-3.0 0 0 0 Updated Feb 4, 2021
  • biomark_assays Public

    Enzyme kinetic assays in the Fluidigm Biomark HD instrument

    EngqvistLab/biomark_assays’s past year of commit activity
    HTML 0 GPL-3.0 0 0 0 Updated Feb 3, 2021
  • Tome Public

    A machine learning model for the prediction of optimal growth temperature of microorganisms and enzyme catalytic optima

    EngqvistLab/Tome’s past year of commit activity
    Python 52 GPL-3.0 15 5 0 Updated Sep 30, 2020
  • DeepET Public

    Summary of scripts and results for the manuscript

    EngqvistLab/DeepET’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Sep 30, 2020
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