Organelle Genome Assembly Toolkit (Chloroplast/Mitocondrial/ITS)
-
Updated
Feb 13, 2025 - Python
#
chloroplast
Here are 17 public repositories matching this topic...
Iterative Organellar Genome Assembly
-
Updated
Jun 9, 2020 - Python
get chloroplast and mitochondrial genes from contigs of genome-skimming or transcriptome data
genome transcriptome protein-coding-genes mitochondrial chloroplast contigs plastome genome-skimming
-
Updated
Feb 15, 2021 - Perl
LOCALIZER: subcellular localization prediction of plant and effector proteins in the plant cell
-
Updated
Jul 31, 2024 - Python
Chloroplast genome assembly, annotation and phylogenetic relationships of different populations of flowering plants
-
Updated
Mar 27, 2025 - Nextflow
-
Updated
Oct 13, 2021 - Python
ASAFind latest version, with options for graphical output and ppc protein prediction
bioinformatics genome protein sequence algae chloroplast mitochondria eukaryotes organelle plastid signal-peptide protein-translocation transit-peptide protein-targeting
-
Updated
Jun 3, 2025 - Python
Molecular Sequence Manipulation Tools
-
Updated
Dec 9, 2022 - R
Assembly of chloroplast genome using long-reads and short-reads for Genomics Course 2021 (MSc Bioinformatics for Computational Genomics)
-
Updated
Apr 2, 2022 - Shell
A modular high-throughput approach for advancing synthetic biology in the chloroplast of Chlamydomonas
-
Updated
Nov 13, 2025 - Python
Chloroplast 16S removal from Metagenomics samples (or any NGS samples)
-
Updated
Feb 14, 2018 - Python
Predicts subplastid localization of proteins along with sequence origin (plastid- or nuclear-encoded).
bioinformatics random-forest r-package hmmer chloroplast plastid subchloroplast-localization subplastid-localization hmm-profile
-
Updated
May 24, 2023 - R
Causal inference of post-transcriptional regulation timelines from long-read sequencing in Arabidopsis thaliana
genomics imputation graphical-models intervention transcription dag causal-inference em-algorithm chloroplast arabidopsis-thaliana do-calculus causal-discovery
-
Updated
Oct 15, 2025 - Python
Do you like plants? If yes, check out my program which tries simulate a chloroplast!
-
Updated
Jun 17, 2021 - Python
R package for extracting chloroplast DNA barcode markers from GenBank plastomes, including rbcL, matK, and psbA-trnH.
-
Updated
Jul 15, 2026 - R
Chloroplast genome structural region extractor (LSC/IRa/SSC/IRb) — published in PeerJ 2020
-
Updated
Jul 30, 2026 - Perl
Add this topic to your repo
To associate your repository with the chloroplast topic, visit your repo's landing page and select "manage topics."