A python based tool for designing conditional guide RNAs

software as a service app build on AI have features such as finding image , codes and much more.

Script used to cdesign sgRNA sequences based on desired input parameters comparing different web-based tools

Genetic Interaction Networks and Pathway Modules

CRISPR-Cas9 Excision Therapy Suitability

Modeling the metabolic changes during the epithelial-to-mesenchymal transition.

Materials and contents for MGSurvE's 2023 Webinar!

application for designing custom CRISPR libraries.

A pipeline to map and visualize in vitro acquired CRIPSR spacers from Illumina sequence data. McKitterick, A. C.; LeGault, K. N.; Angermeyer, A.; Alam, M.; Seed, K. D. Competition between mobile genetic elements drives optimization of a phage-encoded CRISPR-Cas system: insights from a natural arms race. Phil. Trans. R. Soc. B 2019, 374, 20180089…

predicting sgRNA mismatch activity using keras

This repository includes scripts used in "Contribution of CRISPRable DNA on human complex traits"

Performing scRNA-Seq analysis using OpenAI API calls

Mosquito Networks Taskforce: Data Analysis

Analysis of CRISPR self-targeting spacers

Rational Indel Meta-Analysis (RIMA); An Excel-based tool for mutational pattern analysis.

Datasets for the publication: "Transforming Insect Population Control with Precision Guided Sterile Males". These datasets were generated with MGDrivE. For more information follow the link:

CRISPR evaluation code

Analysis codes for high-throughput short read sequencing data. Especially for RCP-PCR experiments on clonal CRISPR KO samples.

Multi-omics analysis of LFQ proteomics and transcriptomics of an ALMS1 gene knockout cell model after TGF-B pathway stimulation.

Contains the code for the pypi package to do the data analysis portion of the MGDrivE project.