CRISPR self-targeting spacers

This repository contains the main code for data collection and analysis of CRISPR self-targeting spacers.

self-target-proteins.tsv: Main data table used in the study (most of the columns were generated by the python scripts in this repository).
gene-product.py: Code used to obtain annotations about protospacer sequences.
protein-info.py: Code used to obtain additional information about proteins being targeted by self-targeting spacers.
download-hypothetical.py: Code used to download the sequences of hypothetical proteins being target of self-targeting spacers.
cctyper.py: Prediction of CRISPR types.
hypothetical.fasta: Amino acid sequences of hypothetical proteins.
taxonomy.py: Code to obtain taxonomical information of each register in the data table.
protospacer-location.py: Analysis of protospacer location in the coding sequences.
scanprosite-result.tsv: Result of analysis of hypothetical proteins with ScanProsite.

Name		Name	Last commit message	Last commit date
Latest commit History 29 Commits
crispr_direction		crispr_direction
.editorconfig		.editorconfig
.gitignore		.gitignore
README.md		README.md
cctyper.py		cctyper.py
deepFRI-predictions.tsv		deepFRI-predictions.tsv
deepgoplus-results.tsv		deepgoplus-results.tsv
download-hypothetical.py		download-hypothetical.py
filtered_s-t-p.tsv		filtered_s-t-p.tsv
gene-product.py		gene-product.py
hypothetical.fasta		hypothetical.fasta
protein-info.py		protein-info.py
protospacer-location.py		protospacer-location.py
scanprosite-result.tsv		scanprosite-result.tsv
self-target-proteins.tsv		self-target-proteins.tsv
sense.py		sense.py
spacers_norm.R		spacers_norm.R
taxonomy.py		taxonomy.py
utils.py		utils.py

Provide feedback