🧬 gget enables efficient querying of genomic reference databases
Python library to facilitate genome assembly, annotation, and comparative genomics
A Python API for the RCSB Protein Data Bank (PDB)
PrimerServer2: a high-throughput primer design and specificity-checking platform
ElasticBLAST is a cloud-based tool to perform your BLAST searches faster and make you more effective
An easy to use and comprehensive python package which aids in the analysis and visualization of orthologous genes. 🐵
Assign taxonomy with blast, can be used for qiime
🌠 Easily download genomes and build BLAST/Bowtie indexes in Python
Workflow for identifying and classifying homologous gene/protein sequences
Retrieve sequences flanked by an arbitrary number of primers from a nucleotide collection.
Most up-to-date scripts used in the Palumbi lab
Search, molecular modeling and molecular docking of peptides.
A utility for blasting one protein FASTA file against another FASTA file to find orthologs.
Snakemake workflow to run transdecoder + trinotate
A Python3 script to quickly spot check 10 random sequences from a BAM/FASTx file.
An ensemble method for predicting transcription factor in protein sequences
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