Toolbox for molecular animations in Blender, powered by Geometry Nodes.

COBRApy is a package for constraint-based modeling of metabolic networks.

Python package to study microbial communities using metabolic modeling.

Analysis of non-covalent interactions in MD trajectories

Contact map analysis for biomolecules; based on MDTraj

AutoML system for building trustworthy peptide bioactivity predictors

A Python parser for the BRENDA database

Files and methodology pertaining to the sequencing and analysis of SARS-CoV-2, causative agent of COVID-19.

A python package to analyse qPCR data for single-use or high-throughput application

An implementation of genome-scale model reconstruction using Cost Optimization Reaction Dependency Assessment by Schultz et. al

genomics, biochemistry, biotechnology, cell biology, biophysics, ecology

Ligand-binding site classification with deep graph neural networks.

Visualize alpha-helical peptide sequences in Python using helical wheels and wenxiang diagrams

Python package and workflow for EFM calculation via (mp)lrs and efmtool

A robust Python library designed for the generation and optimization of molecular fingerprints

Software for the Analysis and Continuous Monitoring of Electrochemical Systems.

semi-supervised deep learning for classification of molecular structures

Use the parallelization framework jug to build exposons!

Bioinformatics (biochemistry) data processing scripts for NMR, and protein data analysis (PyMOL)

Tool for detecting abrupt step changes in noisy signals