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strain-engineering

Here are 3 public repositories matching this topic...

opencobra / cobrapy

COBRApy is a package for constraint-based modeling of metabolic networks.

python flux bioinformatics modeling systems-biology computational-biology biochemistry metabolism cobra metabolic-models sbml metabolic-network cell-design strain-engineering sbml-model sbml-simulation

Updated Jun 9, 2025
Python

opencobra / cobratoolbox

The COnstraint-Based Reconstruction and Analysis Toolbox. Documentation:

tutorial metabolomics reconstruction transcriptomics cobra metabolic-models strain-engineering metabolic-reconstruction constraint-based-modeling microbiome-analysis metabolic-engineering gap-filling cobra-toolbox omics-data-integration human-metabolism

Updated Jul 31, 2025
MATLAB

klamt-lab / straindesign

StrainDesign is a python package for the computational design of metabolic networks and based on COBRApy

python bioinformatics systems-biology computational-biology milp mcs cobrapy strain-engineering strain-design optknock optcouple robustknock flux-space

Updated Mar 4, 2025
Python

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