Implement tests with tox-conda #92

itrharrison · 2022-12-09T18:10:48Z

Re-implement test running using the tox-conda package which enables use of conda package management within tox.

This means we can definte a conda env (added here as soliket-tests.yml) and then run tests using tox in that env on the github action runners.

Users / devs are also able to replicate this environment exaclty on their machines.

I have added a number of skips to some tests, which need to be fixed, and we also need to tidy up where test data is stored!

Note this supercedes #86 which I will close if this passes on the gha runners as it does locally (🤞)... I basically gave up with that PR and learned how to do this from scratch rather than trying to do it backwards modifying other people's set ups 😬 .

BrianJKoopman

Apologies this took me a bit to get to, the end of the year was busy just before the holiday break. It looks good! I learned some stuff about tox and conda during the review.

(Just for context in the review -- my experience with tox is that I explored setting it up on one of the DAQ repos, but stopped when I realized it doesn't bring its own python versions with it, something that it looks like conda solves here. I did eventually test out pyenv, seemingly another solution, but never got back to using with tox.

My experience with conda is I only tend to use it when other folks' packages detail installing with it. In my own development I get by using only virtualenv when needed.)

I know we discussed looking over the workflow aspects of this, that all looks good to me. I didn't really look at the test changes in a lot of detail, but I did try to run the tests locally. I ran into some issues there.

I ended up not getting the local tox -e test run to work, I think in part to getting slow download speeds on campus:

Collecting matplotlib
  Downloading matplotlib-3.5.3-cp37-cp37m-manylinux_2_5_x86_64.manylinux1_x86_64.whl (11.2 MB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 11.2/11.2 MB 489.1 kB/s eta 0:00:00
Collecting mkdocs-material
  Using cached mkdocs_material-9.0.1-py3-none-any.whl (7.7 MB)
Collecting tensorflow>2.0

failed

CondaEnvException: Pip failed


=========================================================================== log end ===========================================================================
ERROR: InvocationError for command /home/vagrant/miniconda/bin/conda env create -p test --file /vagrant/SOLikeT/tox_conda_tmpkz620el1.yaml (exited with code 1)
___________________________________________________________________________ summary ___________________________________________________________________________
ERROR:   test: InvocationError for command /home/vagrant/miniconda/bin/conda env create -p test --file /vagrant/SOLikeT/tox_conda_tmpkz620el1.yaml (exited with code 1)

And running outside of tox failed due to not being able to find camb. Details on that are in the comment below.

The rest of the comments were on some other things I noticed that might not be directly related to running the tests, mostly with the packaging.

setup.cfg

setup.py

BrianJKoopman · 2023-01-03T18:27:09Z

README.md

+2. Check SOLikeT is working as intended in an environment of your own specification.
+
+For this you need to make sure all of the above system-level and python dependencies are working correctly, then run:
 ```
-pip install pytest
-pytest -v .
+pytest -v soliket


This section was helpful, as I'm getting really slow download speeds on my laptop for some reason (~500 kB/s or less), and running with tox-conda was taking forever as a result (so slow in fact that tox ends up failing saying pip failed when downloading tensorflow -- which is 600 MB. I gave up on running it locally, will just look at the GitHub actions runs...) I did install everything else locally though, following the instructions here: https://github.com/simonsobs/SOLikeT/blob/dev-tox-conda-tests/INSTALL.rst

After following those instructions, I have the conda environment setup, and the cobaya-env environment active, but running the tests results in:

=================================================================== short test summary info =================================================================== FAILED soliket/tests/test_bias.py::test_linear_bias_model - cobaya.tools.VersionCheckError: Module camb at /home/vagrant/miniconda/envs/cobaya-env/lib/pytho... FAILED soliket/tests/test_bias.py::test_linear_bias_compute_grid - cobaya.tools.VersionCheckError: Module camb at /home/vagrant/miniconda/envs/cobaya-env/li... FAILED soliket/tests/test_clusters.py::test_clusters_model - cobaya.tools.VersionCheckError: Module camb at /home/vagrant/miniconda/envs/cobaya-env/lib/pyth... FAILED soliket/tests/test_clusters.py::test_clusters_loglike - cobaya.tools.VersionCheckError: Module camb at /home/vagrant/miniconda/envs/cobaya-env/lib/py... FAILED soliket/tests/test_clusters.py::test_clusters_n_expected - cobaya.tools.VersionCheckError: Module camb at /home/vagrant/miniconda/envs/cobaya-env/lib... FAILED soliket/tests/test_cosmopower.py::test_cosmopower_theory - cobaya.component.ComponentNotInstalledError: The data for this likelihood has not been cor... FAILED soliket/tests/test_cosmopower.py::test_cosmopower_loglike - cobaya.component.ComponentNotInstalledError: The data for this likelihood has not been co... FAILED soliket/tests/test_cosmopower.py::test_cosmopower_against_camb - cobaya.tools.VersionCheckError: Module camb at /home/vagrant/miniconda/envs/cobaya-e... FAILED soliket/tests/test_cross_correlation.py::test_galaxykappa_model - cobaya.tools.VersionCheckError: Module camb at /home/vagrant/miniconda/envs/cobaya-... FAILED soliket/tests/test_cross_correlation.py::test_shearkappa_model - cobaya.tools.VersionCheckError: Module camb at /home/vagrant/miniconda/envs/cobaya-e... FAILED soliket/tests/test_cross_correlation.py::test_galaxykappa_like - cobaya.tools.VersionCheckError: Module camb at /home/vagrant/miniconda/envs/cobaya-e... FAILED soliket/tests/test_cross_correlation.py::test_shearkappa_like - cobaya.tools.VersionCheckError: Module camb at /home/vagrant/miniconda/envs/cobaya-en... FAILED soliket/tests/test_cross_correlation.py::test_shearkappa_deltaz - cobaya.tools.VersionCheckError: Module camb at /home/vagrant/miniconda/envs/cobaya-... FAILED soliket/tests/test_cross_correlation.py::test_shearkappa_m - cobaya.tools.VersionCheckError: Module camb at /home/vagrant/miniconda/envs/cobaya-env/l... FAILED soliket/tests/test_cross_correlation.py::test_shearkappa_ia_nla_noevo - cobaya.tools.VersionCheckError: Module camb at /home/vagrant/miniconda/envs/c... FAILED soliket/tests/test_cross_correlation.py::test_shearkappa_ia_nla - cobaya.tools.VersionCheckError: Module camb at /home/vagrant/miniconda/envs/cobaya-... FAILED soliket/tests/test_cross_correlation.py::test_shearkappa_ia_perbin - cobaya.tools.VersionCheckError: Module camb at /home/vagrant/miniconda/envs/coba... FAILED soliket/tests/test_cross_correlation.py::test_shearkappa_hmcode - cobaya.tools.VersionCheckError: Module camb at /home/vagrant/miniconda/envs/cobaya-... FAILED soliket/tests/test_lensing.py::test_lensing[camb] - cobaya.log.LoggedError: The following packages are obsolete. Re-run with `--upgrade` option (not ... FAILED soliket/tests/test_lensing.py::test_lensing[classy] - cobaya.tools.VersionCheckError: Module camb at /home/vagrant/miniconda/envs/cobaya-env/lib/pyth... FAILED soliket/tests/test_lensing_lite.py::test_lensing[camb] - cobaya.tools.VersionCheckError: Module camb at /home/vagrant/miniconda/envs/cobaya-env/lib/p... FAILED soliket/tests/test_runs.py::test_evaluate[lensing_lite] - cobaya.tools.VersionCheckError: Module camb at /home/vagrant/miniconda/envs/cobaya-env/lib/... FAILED soliket/tests/test_runs.py::test_mcmc[lensing_lite] - cobaya.tools.VersionCheckError: Module camb at /home/vagrant/miniconda/envs/cobaya-env/lib/pyth... ============================================== 23 failed, 10 passed, 9 skipped, 5 xfailed, 11 warnings in 33.74s ==============================================

It seems camb is missing, which looks like it might be managed by cobaya-install? However, that looks like it thinks camb is installed:

$ cobaya-install cosmo --packages-path cobaya_packages [install] Installing basic cosmological packages. [install] Installing external packages at '/vagrant/SOLikeT/cobaya_packages' [install] The installation path has been written into the global config file: /home/vagrant/.config/cobaya/config.yaml ================================================================================ theory:camb ================================================================================ [install] Checking if dependencies have already been installed... [install] External dependencies for this component already installed. [install] Doing nothing. ================================================================================ theory:classy ================================================================================ [install] Checking if dependencies have already been installed... [install] External dependencies for this component already installed. [install] Doing nothing. ================================================================================ likelihood:planck_2018_lensing.native ================================================================================ [install] Checking if dependencies have already been installed... [install] External dependencies for this component already installed. [install] Doing nothing. ================================================================================ likelihood:planck_2018_lowl.TT ================================================================================ [install] Checking if dependencies have already been installed... [install] External dependencies for this component already installed. [install] Doing nothing. ================================================================================ likelihood:bicep_keck_2018 ================================================================================ [install] Checking if dependencies have already been installed... [install] External dependencies for this component already installed. [install] Doing nothing. ================================================================================ likelihood:sn.pantheon ================================================================================ [install] Checking if dependencies have already been installed... [install] External dependencies for this component already installed. [install] Doing nothing. ================================================================================ likelihood:bao.sdss_dr12_consensus_final ================================================================================ [install] Checking if dependencies have already been installed... [install] External dependencies for this component already installed. [install] Doing nothing. ================================================================================ likelihood:des_y1.joint ================================================================================ [install] Checking if dependencies have already been installed... [install] External dependencies for this component already installed. [install] Doing nothing. ================================================================================ * Summary * ================================================================================ [install] All requested components' dependencies correctly installed at /vagrant/SOLikeT/cobaya_packages

Also, I'm able to import camb in a python session:

$ python3 Python 3.7.15 (default, Nov 24 2022, 21:12:53) [GCC 11.2.0] :: Anaconda, Inc. on linux Type "help", "copyright", "credits" or "license" for more information. >>> import camb >>> camb.__version__ '0.1.8.1'

I should note this was done in a clean Ubuntu 22.04 machine. Also, I have only a little experience using conda, so there's a possibility I'm doing something wrong here, but I just copied and pasted the instructions linked above, so maybe I'm a good test of the instructions?

This is interesting. camb v0.1.8.1 dates back to 2018, and the current pip version is v1.3.6 https://pypi.org/project/camb/#history which is also the version in conda https://anaconda.org/conda-forge/camb.

Can you try tox -re test to force recreation of the environment?

My pip download speeds seem to have improved from the last time I tried running this, so I may try to run through it from scratch again, but before doing that tox -re test also resulted in an error:

$ tox -re test GLOB sdist-make: /vagrant/SOLikeT/setup.py test create: /vagrant/SOLikeT/.tox/test ERROR: invocation failed (exit code 1), logfile: /vagrant/SOLikeT/.tox/test/log/test-0.log ====================================================== log start ====================================================== Collecting package metadata (repodata.json): ...working... done Solving environment: ...working... done Downloading and Extracting Packages iniconfig-2.0.0 | 11 KB | | 0% zstd-1.5.2 | 410 KB | | 0% setuptools-66.1.1 | 630 KB | | 0% iniconfig-2.0.0 | 11 KB | ########## | 100% packaging-23.0 | 40 KB | | 0% setuptools-66.1.1 | 630 KB | 2 | 3% iniconfig-2.0.0 | 11 KB | ########## | 100% packaging-23.0 | 40 KB | #### | 40% cmake-3.25.2 | 15.3 MB | | 0% packaging-23.0 | 40 KB | ########## | 100% packaging-23.0 | 40 KB | ########## | 100% setuptools-66.1.1 | 630 KB | ########## | 100% zstd-1.5.2 | 410 KB | 3 | 4% zstd-1.5.2 | 410 KB | ########## | 100% zstd-1.5.2 | 410 KB | ########## | 100% cmake-3.25.2 | 15.3 MB | ########## | 100% Preparing transaction: ...working... done Verifying transaction: ...working... done Executing transaction: ...working... done Installing pip dependencies: ...working... Pip subprocess error: Running command git clone --filter=blob:none --quiet https://github.com/simonsobs/fgspectra /tmp/pip-install-jb9jz4_a/fgspectra_f0ba57d42700465f8f2b544b0f35a557 Running command git checkout -b act_sz_x_cib --track origin/act_sz_x_cib Switched to a new branch 'act_sz_x_cib' Branch 'act_sz_x_cib' set up to track remote branch 'act_sz_x_cib' from 'origin'. Running command git clone --filter=blob:none --quiet https://github.com/simonsobs/lat_mflike /tmp/pip-install-jb9jz4_a/mflike_540d2d3dd19444358f9d6e03ce239bb7 /vagrant/SOLikeT/.tox/test/.tmp_eex_5pm: line 3: 3914 Killed /vagrant/SOLikeT/.tox/test/bin/python -m pip install -U -r /vagrant/SOLikeT/condaenv.6sc1syl2.requirements.txt --exists-action=b Ran pip subprocess with arguments: ['/vagrant/SOLikeT/.tox/test/bin/python', '-m', 'pip', 'install', '-U', '-r', '/vagrant/SOLikeT/condaenv.6sc1syl2.requirements.txt', '--exists-action=b'] Pip subprocess output: Collecting fgspectra@ git+https://github.com/simonsobs/fgspectra@act_sz_x_cib#egg=fgspectra Cloning https://github.com/simonsobs/fgspectra (to revision act_sz_x_cib) to /tmp/pip-install-jb9jz4_a/fgspectra_f0ba57d42700465f8f2b544b0f35a557 Resolved https://github.com/simonsobs/fgspectra to commit 50865f485ce37f128b58ac52a39a57d669038608 Preparing metadata (setup.py): started Preparing metadata (setup.py): finished with status 'done' Collecting mflike@ git+https://github.com/simonsobs/lat_mflike@master Cloning https://github.com/simonsobs/lat_mflike (to revision master) to /tmp/pip-install-jb9jz4_a/mflike_540d2d3dd19444358f9d6e03ce239bb7 Resolved https://github.com/simonsobs/lat_mflike to commit f27186500e42b1deb80b75a3256530bc3baacaae Preparing metadata (setup.py): started Preparing metadata (setup.py): finished with status 'done' Collecting numpy Using cached numpy-1.21.6-cp37-cp37m-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (15.7 MB) Collecting scipy Using cached scipy-1.7.3-cp37-cp37m-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (38.1 MB) Collecting pandas Using cached pandas-1.3.5-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (11.3 MB) Collecting scikit-learn Using cached scikit_learn-1.0.2-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (24.8 MB) Collecting pyyaml Using cached PyYAML-6.0-cp37-cp37m-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (596 kB) Collecting py-bobyqa Using cached Py_BOBYQA-1.3-py3-none-any.whl Requirement already satisfied: packaging in ./.tox/test/lib/python3.7/site-packages (from -r /vagrant/SOLikeT/requirements.txt (line 7)) (23.0) Collecting tqdm Using cached tqdm-4.64.1-py2.py3-none-any.whl (78 kB) Collecting portalocker Using cached portalocker-2.7.0-py2.py3-none-any.whl (15 kB) Collecting dill Using cached dill-0.3.6-py3-none-any.whl (110 kB) Collecting fuzzywuzzy Using cached fuzzywuzzy-0.18.0-py2.py3-none-any.whl (18 kB) Collecting astropy Using cached astropy-4.3.1-cp37-cp37m-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (10.7 MB) Collecting camb Using cached camb-1.3.6.tar.gz (1.7 MB) Preparing metadata (setup.py): started Preparing metadata (setup.py): finished with status 'done' Collecting cosmopower Using cached cosmopower-0.1.0-py3-none-any.whl (35 kB) Collecting getdist Using cached GetDist-1.4-py3-none-any.whl Collecting cobaya Using cached cobaya-3.2.2-py3-none-any.whl Collecting pyccl Downloading pyccl-2.6.1.tar.gz (12.6 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 12.6/12.6 MB 8.4 MB/s eta 0:00:00 Preparing metadata (setup.py): started Preparing metadata (setup.py): finished with status 'done' Collecting sacc Using cached sacc-0.7-py3-none-any.whl Collecting python-dateutil>=2.7.3 Using cached python_dateutil-2.8.2-py2.py3-none-any.whl (247 kB) Collecting pytz>=2017.3 Downloading pytz-2022.7.1-py2.py3-none-any.whl (499 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 499.4/499.4 kB 57.0 MB/s eta 0:00:00 Collecting joblib>=0.11 Using cached joblib-1.2.0-py3-none-any.whl (297 kB) Collecting threadpoolctl>=2.0.0 Using cached threadpoolctl-3.1.0-py3-none-any.whl (14 kB) Requirement already satisfied: importlib-metadata in ./.tox/test/lib/python3.7/site-packages (from astropy->-r /vagrant/SOLikeT/requirements.txt (line 12)) (4.11.4) Collecting pyerfa>=1.7.3 Using cached pyerfa-2.0.0.1-cp37-cp37m-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (746 kB) Collecting sympy>=1.0 Using cached sympy-1.10.1-py3-none-any.whl (6.4 MB) Collecting mkdocstrings Downloading mkdocstrings-0.20.0-py3-none-any.whl (26 kB) Collecting tensorflow>2.0 failed CondaEnvException: Pip failed ======================================================= log end ======================================================= ERROR: InvocationError for command /home/vagrant/miniconda/bin/conda env create -p test --file /vagrant/SOLikeT/tox_conda_tmpnmp5wesy.yaml (exited with code 1) _______________________________________________________ summary _______________________________________________________ ERROR: test: InvocationError for command /home/vagrant/miniconda/bin/conda env create -p test --file /vagrant/SOLikeT/tox_conda_tmpnmp5wesy.yaml (exited with code 1)

Starting from a clean Ubuntu 22.04 VM I get to this same error after following the "your own laptop/virtual machine" installation instructions and then installing tox-conda and running tox -e test.

Running with some verbose flags:

$ tox -vve test using tox.ini: /vagrant/SOLikeT/tox.ini (pid 18421) removing /vagrant/SOLikeT/.tox/log using tox-3.28.0 from /home/vagrant/miniconda/envs/cobaya-env/lib/python3.7/site-packages/tox/__init__.py (pid 18421) GLOB start: packaging GLOB sdist-make: /vagrant/SOLikeT/setup.py removing /vagrant/SOLikeT/.tox/dist [18472] /vagrant/SOLikeT$ /home/vagrant/miniconda/envs/cobaya-env/bin/python setup.py sdist --formats=zip --dist-dir .tox/dist >.tox/log/GLOB-0.log running sdist running egg_info writing soliket.egg-info/PKG-INFO writing dependency_links to soliket.egg-info/dependency_links.txt writing requirements to soliket.egg-info/requires.txt writing top-level names to soliket.egg-info/top_level.txt adding license file 'LICENSE' writing manifest file 'soliket.egg-info/SOURCES.txt' running check creating soliket-0.1.dev273+g762dce9 creating soliket-0.1.dev273+g762dce9/.github creating soliket-0.1.dev273+g762dce9/.github/workflows creating soliket-0.1.dev273+g762dce9/ci_scripts creating soliket-0.1.dev273+g762dce9/notebooks creating soliket-0.1.dev273+g762dce9/notebooks/dev creating soliket-0.1.dev273+g762dce9/soliket creating soliket-0.1.dev273+g762dce9/soliket.egg-info creating soliket-0.1.dev273+g762dce9/soliket/clusters creating soliket-0.1.dev273+g762dce9/soliket/clusters/data creating soliket-0.1.dev273+g762dce9/soliket/clusters/data/selFn_equD56 creating soliket-0.1.dev273+g762dce9/soliket/data creating soliket-0.1.dev273+g762dce9/soliket/data/CosmoPower creating soliket-0.1.dev273+g762dce9/soliket/data/CosmoPower/CP_paper creating soliket-0.1.dev273+g762dce9/soliket/data/CosmoPower/CP_paper/CMB creating soliket-0.1.dev273+g762dce9/soliket/data/simulated_clkk_SO_Apr17_mv_nlkk_deproj0_SENS1_fsky_16000_iterOn_20191109 creating soliket-0.1.dev273+g762dce9/soliket/data/xcorr_simulated creating soliket-0.1.dev273+g762dce9/soliket/lensing creating soliket-0.1.dev273+g762dce9/soliket/lensing/data creating soliket-0.1.dev273+g762dce9/soliket/mflike creating soliket-0.1.dev273+g762dce9/soliket/tests creating soliket-0.1.dev273+g762dce9/soliket/tests/data creating soliket-0.1.dev273+g762dce9/soliket/xcorr creating soliket-0.1.dev273+g762dce9/soliket/xcorr/data copying files to soliket-0.1.dev273+g762dce9... copying .gitignore -> soliket-0.1.dev273+g762dce9 copying .pre-commit-config.yaml -> soliket-0.1.dev273+g762dce9 copying CONTRIBUTING.rst -> soliket-0.1.dev273+g762dce9 copying INSTALL.rst -> soliket-0.1.dev273+g762dce9 copying LICENSE -> soliket-0.1.dev273+g762dce9 copying README.md -> soliket-0.1.dev273+g762dce9 copying codecov.yml -> soliket-0.1.dev273+g762dce9 copying guidelines.md -> soliket-0.1.dev273+g762dce9 copying requirements.txt -> soliket-0.1.dev273+g762dce9 copying setup.cfg -> soliket-0.1.dev273+g762dce9 copying setup.py -> soliket-0.1.dev273+g762dce9 copying soliket-tests.yml -> soliket-0.1.dev273+g762dce9 copying theory-component-guidelines.rst -> soliket-0.1.dev273+g762dce9 copying tox.ini -> soliket-0.1.dev273+g762dce9 copying .github/workflows/codestyle.yml -> soliket-0.1.dev273+g762dce9/.github/workflows copying .github/workflows/testing.yml -> soliket-0.1.dev273+g762dce9/.github/workflows copying ci_scripts/install_class_linux.sh -> soliket-0.1.dev273+g762dce9/ci_scripts copying ci_scripts/install_class_osx.sh -> soliket-0.1.dev273+g762dce9/ci_scripts copying notebooks/dev/clusters.ipynb -> soliket-0.1.dev273+g762dce9/notebooks/dev copying notebooks/dev/cov.html -> soliket-0.1.dev273+g762dce9/notebooks/dev copying notebooks/dev/cross_correlation_simulatedata.ipynb -> soliket-0.1.dev273+g762dce9/notebooks/dev copying notebooks/dev/multi-like-test.ipynb -> soliket-0.1.dev273+g762dce9/notebooks/dev copying notebooks/dev/multi-test.ipynb -> soliket-0.1.dev273+g762dce9/notebooks/dev copying notebooks/dev/poisson.ipynb -> soliket-0.1.dev273+g762dce9/notebooks/dev copying soliket/BandPass.yaml -> soliket-0.1.dev273+g762dce9/soliket copying soliket/CrossCorrelationLikelihood.yaml -> soliket-0.1.dev273+g762dce9/soliket copying soliket/Foreground.yaml -> soliket-0.1.dev273+g762dce9/soliket copying soliket/__init__.py -> soliket-0.1.dev273+g762dce9/soliket copying soliket/bandpass.py -> soliket-0.1.dev273+g762dce9/soliket copying soliket/bias.py -> soliket-0.1.dev273+g762dce9/soliket copying soliket/cash.py -> soliket-0.1.dev273+g762dce9/soliket copying soliket/cash_data.py -> soliket-0.1.dev273+g762dce9/soliket copying soliket/ccl.py -> soliket-0.1.dev273+g762dce9/soliket copying soliket/constants.py -> soliket-0.1.dev273+g762dce9/soliket copying soliket/cosmopower.py -> soliket-0.1.dev273+g762dce9/soliket copying soliket/cross_correlation.py -> soliket-0.1.dev273+g762dce9/soliket copying soliket/foreground.py -> soliket-0.1.dev273+g762dce9/soliket copying soliket/gaussian.py -> soliket-0.1.dev273+g762dce9/soliket copying soliket/gaussian_data.py -> soliket-0.1.dev273+g762dce9/soliket copying soliket/poisson.py -> soliket-0.1.dev273+g762dce9/soliket copying soliket/poisson_data.py -> soliket-0.1.dev273+g762dce9/soliket copying soliket/ps.py -> soliket-0.1.dev273+g762dce9/soliket copying soliket/utils.py -> soliket-0.1.dev273+g762dce9/soliket copying soliket.egg-info/PKG-INFO -> soliket-0.1.dev273+g762dce9/soliket.egg-info copying soliket.egg-info/SOURCES.txt -> soliket-0.1.dev273+g762dce9/soliket.egg-info copying soliket.egg-info/dependency_links.txt -> soliket-0.1.dev273+g762dce9/soliket.egg-info copying soliket.egg-info/not-zip-safe -> soliket-0.1.dev273+g762dce9/soliket.egg-info copying soliket.egg-info/requires.txt -> soliket-0.1.dev273+g762dce9/soliket.egg-info copying soliket.egg-info/top_level.txt -> soliket-0.1.dev273+g762dce9/soliket.egg-info copying soliket/clusters/__init__.py -> soliket-0.1.dev273+g762dce9/soliket/clusters copying soliket/clusters/clusters.py -> soliket-0.1.dev273+g762dce9/soliket/clusters copying soliket/clusters/massfunc.py -> soliket-0.1.dev273+g762dce9/soliket/clusters copying soliket/clusters/survey.py -> soliket-0.1.dev273+g762dce9/soliket/clusters copying soliket/clusters/sz_utils.py -> soliket-0.1.dev273+g762dce9/soliket/clusters copying soliket/clusters/tinker.py -> soliket-0.1.dev273+g762dce9/soliket/clusters copying soliket/clusters/data/ACTPol_Cond_scatv5.fits -> soliket-0.1.dev273+g762dce9/soliket/clusters/data copying soliket/clusters/data/E-D56Clusters.fits -> soliket-0.1.dev273+g762dce9/soliket/clusters/data copying soliket/clusters/data/selFn_equD56/QFit.fits -> soliket-0.1.dev273+g762dce9/soliket/clusters/data/selFn_equD56 copying soliket/clusters/data/selFn_equD56/RMSMap_Arnaud_M2e14_z0p4.fits.gz -> soliket-0.1.dev273+g762dce9/soliket/clusters/data/selFn_equD56 copying soliket/clusters/data/selFn_equD56/RMSTab.fits -> soliket-0.1.dev273+g762dce9/soliket/clusters/data/selFn_equD56 copying soliket/clusters/data/selFn_equD56/areaMask.fits.gz -> soliket-0.1.dev273+g762dce9/soliket/clusters/data/selFn_equD56 copying soliket/clusters/data/selFn_equD56/fRelWeights.fits -> soliket-0.1.dev273+g762dce9/soliket/clusters/data/selFn_equD56 copying soliket/data/CosmoPower/CP_paper/CMB/cmb_EE_NN.pkl -> soliket-0.1.dev273+g762dce9/soliket/data/CosmoPower/CP_paper/CMB copying soliket/data/CosmoPower/CP_paper/CMB/cmb_TE_PCAplusNN.pkl -> soliket-0.1.dev273+g762dce9/soliket/data/CosmoPower/CP_paper/CMB copying soliket/data/CosmoPower/CP_paper/CMB/cmb_TT_NN.pkl -> soliket-0.1.dev273+g762dce9/soliket/data/CosmoPower/CP_paper/CMB copying soliket/data/simulated_clkk_SO_Apr17_mv_nlkk_deproj0_SENS1_fsky_16000_iterOn_20191109/simulated_clkk_SO_Apr17_mv_nlkk_deproj0_SENS1_fsky_16000_iterOn_20191109_binned_covmat.txt -> soliket-0.1.dev273+g762dce9/soliket/data/simulated_clkk_SO_Apr17_mv_nlkk_deproj0_SENS1_fsky_16000_iterOn_20191109 copying soliket/data/simulated_clkk_SO_Apr17_mv_nlkk_deproj0_SENS1_fsky_16000_iterOn_20191109/simulated_clkk_SO_Apr17_mv_nlkk_deproj0_SENS1_fsky_16000_iterOn_20191109_sim_00_bandpowers.txt -> soliket-0.1.dev273+g762dce9/soliket/data/simulated_clkk_SO_Apr17_mv_nlkk_deproj0_SENS1_fsky_16000_iterOn_20191109 copying soliket/data/simulated_clkk_SO_Apr17_mv_nlkk_deproj0_SENS1_fsky_16000_iterOn_20191109/simulated_clkk_SO_Apr17_mv_nlkk_deproj0_SENS1_fsky_16000_iterOn_20191109_sim_01_bandpowers.txt -> soliket-0.1.dev273+g762dce9/soliket/data/simulated_clkk_SO_Apr17_mv_nlkk_deproj0_SENS1_fsky_16000_iterOn_20191109 copying soliket/data/simulated_clkk_SO_Apr17_mv_nlkk_deproj0_SENS1_fsky_16000_iterOn_20191109/simulated_clkk_SO_Apr17_mv_nlkk_deproj0_SENS1_fsky_16000_iterOn_20191109_sim_02_bandpowers.txt -> soliket-0.1.dev273+g762dce9/soliket/data/simulated_clkk_SO_Apr17_mv_nlkk_deproj0_SENS1_fsky_16000_iterOn_20191109 copying soliket/data/simulated_clkk_SO_Apr17_mv_nlkk_deproj0_SENS1_fsky_16000_iterOn_20191109/simulated_clkk_SO_Apr17_mv_nlkk_deproj0_SENS1_fsky_16000_iterOn_20191109_sim_03_bandpowers.txt -> soliket-0.1.dev273+g762dce9/soliket/data/simulated_clkk_SO_Apr17_mv_nlkk_deproj0_SENS1_fsky_16000_iterOn_20191109 copying soliket/data/simulated_clkk_SO_Apr17_mv_nlkk_deproj0_SENS1_fsky_16000_iterOn_20191109/simulated_clkk_SO_Apr17_mv_nlkk_deproj0_SENS1_fsky_16000_iterOn_20191109_sim_04_bandpowers.txt -> soliket-0.1.dev273+g762dce9/soliket/data/simulated_clkk_SO_Apr17_mv_nlkk_deproj0_SENS1_fsky_16000_iterOn_20191109 copying soliket/data/simulated_clkk_SO_Apr17_mv_nlkk_deproj0_SENS1_fsky_16000_iterOn_20191109/simulated_clkk_SO_Apr17_mv_nlkk_deproj0_SENS1_fsky_16000_iterOn_20191109_sim_05_bandpowers.txt -> soliket-0.1.dev273+g762dce9/soliket/data/simulated_clkk_SO_Apr17_mv_nlkk_deproj0_SENS1_fsky_16000_iterOn_20191109 copying soliket/data/simulated_clkk_SO_Apr17_mv_nlkk_deproj0_SENS1_fsky_16000_iterOn_20191109/simulated_clkk_SO_Apr17_mv_nlkk_deproj0_SENS1_fsky_16000_iterOn_20191109_sim_06_bandpowers.txt -> soliket-0.1.dev273+g762dce9/soliket/data/simulated_clkk_SO_Apr17_mv_nlkk_deproj0_SENS1_fsky_16000_iterOn_20191109 copying soliket/data/simulated_clkk_SO_Apr17_mv_nlkk_deproj0_SENS1_fsky_16000_iterOn_20191109/simulated_clkk_SO_Apr17_mv_nlkk_deproj0_SENS1_fsky_16000_iterOn_20191109_sim_07_bandpowers.txt -> soliket-0.1.dev273+g762dce9/soliket/data/simulated_clkk_SO_Apr17_mv_nlkk_deproj0_SENS1_fsky_16000_iterOn_20191109 copying soliket/data/simulated_clkk_SO_Apr17_mv_nlkk_deproj0_SENS1_fsky_16000_iterOn_20191109/simulated_clkk_SO_Apr17_mv_nlkk_deproj0_SENS1_fsky_16000_iterOn_20191109_sim_08_bandpowers.txt -> soliket-0.1.dev273+g762dce9/soliket/data/simulated_clkk_SO_Apr17_mv_nlkk_deproj0_SENS1_fsky_16000_iterOn_20191109 copying soliket/data/simulated_clkk_SO_Apr17_mv_nlkk_deproj0_SENS1_fsky_16000_iterOn_20191109/simulated_clkk_SO_Apr17_mv_nlkk_deproj0_SENS1_fsky_16000_iterOn_20191109_sim_09_bandpowers.txt -> soliket-0.1.dev273+g762dce9/soliket/data/simulated_clkk_SO_Apr17_mv_nlkk_deproj0_SENS1_fsky_16000_iterOn_20191109 copying soliket/data/simulated_clkk_SO_Apr17_mv_nlkk_deproj0_SENS1_fsky_16000_iterOn_20191109/simulated_clkk_SO_Apr17_mv_nlkk_deproj0_SENS1_fsky_16000_iterOn_20191109_sim_10_bandpowers.txt -> soliket-0.1.dev273+g762dce9/soliket/data/simulated_clkk_SO_Apr17_mv_nlkk_deproj0_SENS1_fsky_16000_iterOn_20191109 copying soliket/data/simulated_clkk_SO_Apr17_mv_nlkk_deproj0_SENS1_fsky_16000_iterOn_20191109/simulated_clkk_SO_Apr17_mv_nlkk_deproj0_SENS1_fsky_16000_iterOn_20191109_sim_11_bandpowers.txt -> soliket-0.1.dev273+g762dce9/soliket/data/simulated_clkk_SO_Apr17_mv_nlkk_deproj0_SENS1_fsky_16000_iterOn_20191109 copying soliket/data/simulated_clkk_SO_Apr17_mv_nlkk_deproj0_SENS1_fsky_16000_iterOn_20191109/simulated_clkk_SO_Apr17_mv_nlkk_deproj0_SENS1_fsky_16000_iterOn_20191109_sim_12_bandpowers.txt -> soliket-0.1.dev273+g762dce9/soliket/data/simulated_clkk_SO_Apr17_mv_nlkk_deproj0_SENS1_fsky_16000_iterOn_20191109 copying soliket/data/simulated_clkk_SO_Apr17_mv_nlkk_deproj0_SENS1_fsky_16000_iterOn_20191109/simulated_clkk_SO_Apr17_mv_nlkk_deproj0_SENS1_fsky_16000_iterOn_20191109_sim_13_bandpowers.txt -> soliket-0.1.dev273+g762dce9/soliket/data/simulated_clkk_SO_Apr17_mv_nlkk_deproj0_SENS1_fsky_16000_iterOn_20191109 copying soliket/data/simulated_clkk_SO_Apr17_mv_nlkk_deproj0_SENS1_fsky_16000_iterOn_20191109/simulated_clkk_SO_Apr17_mv_nlkk_deproj0_SENS1_fsky_16000_iterOn_20191109_sim_14_bandpowers.txt -> soliket-0.1.dev273+g762dce9/soliket/data/simulated_clkk_SO_Apr17_mv_nlkk_deproj0_SENS1_fsky_16000_iterOn_20191109 copying soliket/data/simulated_clkk_SO_Apr17_mv_nlkk_deproj0_SENS1_fsky_16000_iterOn_20191109/simulated_clkk_SO_Apr17_mv_nlkk_deproj0_SENS1_fsky_16000_iterOn_20191109_sim_15_bandpowers.txt -> soliket-0.1.dev273+g762dce9/soliket/data/simulated_clkk_SO_Apr17_mv_nlkk_deproj0_SENS1_fsky_16000_iterOn_20191109 copying soliket/data/simulated_clkk_SO_Apr17_mv_nlkk_deproj0_SENS1_fsky_16000_iterOn_20191109/simulated_clkk_SO_Apr17_mv_nlkk_deproj0_SENS1_fsky_16000_iterOn_20191109_sim_16_bandpowers.txt -> soliket-0.1.dev273+g762dce9/soliket/data/simulated_clkk_SO_Apr17_mv_nlkk_deproj0_SENS1_fsky_16000_iterOn_20191109 copying soliket/data/simulated_clkk_SO_Apr17_mv_nlkk_deproj0_SENS1_fsky_16000_iterOn_20191109/simulated_clkk_SO_Apr17_mv_nlkk_deproj0_SENS1_fsky_16000_iterOn_20191109_sim_17_bandpowers.txt -> soliket-0.1.dev273+g762dce9/soliket/data/simulated_clkk_SO_Apr17_mv_nlkk_deproj0_SENS1_fsky_16000_iterOn_20191109 copying soliket/data/simulated_clkk_SO_Apr17_mv_nlkk_deproj0_SENS1_fsky_16000_iterOn_20191109/simulated_clkk_SO_Apr17_mv_nlkk_deproj0_SENS1_fsky_16000_iterOn_20191109_sim_18_bandpowers.txt -> soliket-0.1.dev273+g762dce9/soliket/data/simulated_clkk_SO_Apr17_mv_nlkk_deproj0_SENS1_fsky_16000_iterOn_20191109 copying soliket/data/simulated_clkk_SO_Apr17_mv_nlkk_deproj0_SENS1_fsky_16000_iterOn_20191109/simulated_clkk_SO_Apr17_mv_nlkk_deproj0_SENS1_fsky_16000_iterOn_20191109_sim_19_bandpowers.txt -> soliket-0.1.dev273+g762dce9/soliket/data/simulated_clkk_SO_Apr17_mv_nlkk_deproj0_SENS1_fsky_16000_iterOn_20191109 copying soliket/data/xcorr_simulated/clgg_noiseless.txt -> soliket-0.1.dev273+g762dce9/soliket/data/xcorr_simulated copying soliket/data/xcorr_simulated/clkg_noiseless.txt -> soliket-0.1.dev273+g762dce9/soliket/data/xcorr_simulated copying soliket/data/xcorr_simulated/dndz.txt -> soliket-0.1.dev273+g762dce9/soliket/data/xcorr_simulated copying soliket/lensing/__init__.py -> soliket-0.1.dev273+g762dce9/soliket/lensing copying soliket/lensing/lensing.py -> soliket-0.1.dev273+g762dce9/soliket/lensing copying soliket/lensing/data/binnedauto.txt -> soliket-0.1.dev273+g762dce9/soliket/lensing/data copying soliket/lensing/data/binnedcov.txt -> soliket-0.1.dev273+g762dce9/soliket/lensing/data copying soliket/lensing/data/binningmatrix.txt -> soliket-0.1.dev273+g762dce9/soliket/lensing/data copying soliket/mflike/MFLike.yaml -> soliket-0.1.dev273+g762dce9/soliket/mflike copying soliket/mflike/TheoryForge_MFLike.yaml -> soliket-0.1.dev273+g762dce9/soliket/mflike copying soliket/mflike/__init__.py -> soliket-0.1.dev273+g762dce9/soliket/mflike copying soliket/mflike/mflike.py -> soliket-0.1.dev273+g762dce9/soliket/mflike copying soliket/mflike/theoryforge_MFLike.py -> soliket-0.1.dev273+g762dce9/soliket/mflike copying soliket/tests/__init__.py -> soliket-0.1.dev273+g762dce9/soliket/tests copying soliket/tests/test_bias.py -> soliket-0.1.dev273+g762dce9/soliket/tests copying soliket/tests/test_bias.yaml -> soliket-0.1.dev273+g762dce9/soliket/tests copying soliket/tests/test_cash.py -> soliket-0.1.dev273+g762dce9/soliket/tests copying soliket/tests/test_ccl.ipynb -> soliket-0.1.dev273+g762dce9/soliket/tests copying soliket/tests/test_cluster.ipynb -> soliket-0.1.dev273+g762dce9/soliket/tests copying soliket/tests/test_clusters.py -> soliket-0.1.dev273+g762dce9/soliket/tests copying soliket/tests/test_clusters.yaml -> soliket-0.1.dev273+g762dce9/soliket/tests copying soliket/tests/test_cosmopower.py -> soliket-0.1.dev273+g762dce9/soliket/tests copying soliket/tests/test_cross_correlation.py -> soliket-0.1.dev273+g762dce9/soliket/tests copying soliket/tests/test_cross_correlation.yaml -> soliket-0.1.dev273+g762dce9/soliket/tests copying soliket/tests/test_gaussian.py -> soliket-0.1.dev273+g762dce9/soliket/tests copying soliket/tests/test_lensing.py -> soliket-0.1.dev273+g762dce9/soliket/tests copying soliket/tests/test_lensing.yaml -> soliket-0.1.dev273+g762dce9/soliket/tests copying soliket/tests/test_lensing_lite.py -> soliket-0.1.dev273+g762dce9/soliket/tests copying soliket/tests/test_lensing_lite.yaml -> soliket-0.1.dev273+g762dce9/soliket/tests copying soliket/tests/test_mflike.py -> soliket-0.1.dev273+g762dce9/soliket/tests copying soliket/tests/test_mflike.yaml -> soliket-0.1.dev273+g762dce9/soliket/tests copying soliket/tests/test_multi.py -> soliket-0.1.dev273+g762dce9/soliket/tests copying soliket/tests/test_multi.yaml -> soliket-0.1.dev273+g762dce9/soliket/tests copying soliket/tests/test_poisson.py -> soliket-0.1.dev273+g762dce9/soliket/tests copying soliket/tests/test_ps.py -> soliket-0.1.dev273+g762dce9/soliket/tests copying soliket/tests/test_runs.py -> soliket-0.1.dev273+g762dce9/soliket/tests copying soliket/tests/test_xcorr.py -> soliket-0.1.dev273+g762dce9/soliket/tests copying soliket/tests/test_xcorr.yaml -> soliket-0.1.dev273+g762dce9/soliket/tests copying soliket/tests/data/cs82_gs-planck_kappa_binned.sim.sacc.fits -> soliket-0.1.dev273+g762dce9/soliket/tests/data copying soliket/tests/data/des_s-act_kappa.toy-sim.sacc.fits -> soliket-0.1.dev273+g762dce9/soliket/tests/data copying soliket/tests/data/dndz_hsc.txt -> soliket-0.1.dev273+g762dce9/soliket/tests/data copying soliket/tests/data/lcl_hsc.txt -> soliket-0.1.dev273+g762dce9/soliket/tests/data copying soliket/tests/data/unwise_g-so_kappa.sim.sacc.fits -> soliket-0.1.dev273+g762dce9/soliket/tests/data copying soliket/xcorr/XcorrLikelihood.yaml -> soliket-0.1.dev273+g762dce9/soliket/xcorr copying soliket/xcorr/__init__.py -> soliket-0.1.dev273+g762dce9/soliket/xcorr copying soliket/xcorr/limber.py -> soliket-0.1.dev273+g762dce9/soliket/xcorr copying soliket/xcorr/xcorr.py -> soliket-0.1.dev273+g762dce9/soliket/xcorr copying soliket/xcorr/data/clgg.txt -> soliket-0.1.dev273+g762dce9/soliket/xcorr/data copying soliket/xcorr/data/clkg.txt -> soliket-0.1.dev273+g762dce9/soliket/xcorr/data copying soliket/xcorr/data/dndz.txt -> soliket-0.1.dev273+g762dce9/soliket/xcorr/data Writing soliket-0.1.dev273+g762dce9/setup.cfg creating '.tox/dist/soliket-0.1.dev273+g762dce9.zip' and adding 'soliket-0.1.dev273+g762dce9' to it adding 'soliket-0.1.dev273+g762dce9' adding 'soliket-0.1.dev273+g762dce9/notebooks' adding 'soliket-0.1.dev273+g762dce9/.github' adding 'soliket-0.1.dev273+g762dce9/soliket' adding 'soliket-0.1.dev273+g762dce9/ci_scripts' adding 'soliket-0.1.dev273+g762dce9/soliket.egg-info' adding 'soliket-0.1.dev273+g762dce9/requirements.txt' adding 'soliket-0.1.dev273+g762dce9/INSTALL.rst' adding 'soliket-0.1.dev273+g762dce9/setup.py' adding 'soliket-0.1.dev273+g762dce9/PKG-INFO' adding 'soliket-0.1.dev273+g762dce9/guidelines.md' adding 'soliket-0.1.dev273+g762dce9/setup.cfg' adding 'soliket-0.1.dev273+g762dce9/README.md' adding 'soliket-0.1.dev273+g762dce9/.gitignore' adding 'soliket-0.1.dev273+g762dce9/soliket-tests.yml' adding 'soliket-0.1.dev273+g762dce9/theory-component-guidelines.rst' adding 'soliket-0.1.dev273+g762dce9/codecov.yml' adding 'soliket-0.1.dev273+g762dce9/CONTRIBUTING.rst' adding 'soliket-0.1.dev273+g762dce9/LICENSE' adding 'soliket-0.1.dev273+g762dce9/tox.ini' adding 'soliket-0.1.dev273+g762dce9/.pre-commit-config.yaml' adding 'soliket-0.1.dev273+g762dce9/notebooks/dev' adding 'soliket-0.1.dev273+g762dce9/notebooks/dev/multi-test.ipynb' adding 'soliket-0.1.dev273+g762dce9/notebooks/dev/clusters.ipynb' adding 'soliket-0.1.dev273+g762dce9/notebooks/dev/multi-like-test.ipynb' adding 'soliket-0.1.dev273+g762dce9/notebooks/dev/cross_correlation_simulatedata.ipynb' adding 'soliket-0.1.dev273+g762dce9/notebooks/dev/cov.html' adding 'soliket-0.1.dev273+g762dce9/notebooks/dev/poisson.ipynb' adding 'soliket-0.1.dev273+g762dce9/.github/workflows' adding 'soliket-0.1.dev273+g762dce9/.github/workflows/testing.yml' adding 'soliket-0.1.dev273+g762dce9/.github/workflows/codestyle.yml' adding 'soliket-0.1.dev273+g762dce9/soliket/lensing' adding 'soliket-0.1.dev273+g762dce9/soliket/tests' adding 'soliket-0.1.dev273+g762dce9/soliket/xcorr' adding 'soliket-0.1.dev273+g762dce9/soliket/mflike' adding 'soliket-0.1.dev273+g762dce9/soliket/data' adding 'soliket-0.1.dev273+g762dce9/soliket/clusters' adding 'soliket-0.1.dev273+g762dce9/soliket/poisson.py' adding 'soliket-0.1.dev273+g762dce9/soliket/utils.py' adding 'soliket-0.1.dev273+g762dce9/soliket/cash.py' adding 'soliket-0.1.dev273+g762dce9/soliket/gaussian.py' adding 'soliket-0.1.dev273+g762dce9/soliket/Foreground.yaml' adding 'soliket-0.1.dev273+g762dce9/soliket/ps.py' adding 'soliket-0.1.dev273+g762dce9/soliket/ccl.py' adding 'soliket-0.1.dev273+g762dce9/soliket/foreground.py' adding 'soliket-0.1.dev273+g762dce9/soliket/bias.py' adding 'soliket-0.1.dev273+g762dce9/soliket/__init__.py' adding 'soliket-0.1.dev273+g762dce9/soliket/CrossCorrelationLikelihood.yaml' adding 'soliket-0.1.dev273+g762dce9/soliket/constants.py' adding 'soliket-0.1.dev273+g762dce9/soliket/gaussian_data.py' adding 'soliket-0.1.dev273+g762dce9/soliket/bandpass.py' adding 'soliket-0.1.dev273+g762dce9/soliket/cosmopower.py' adding 'soliket-0.1.dev273+g762dce9/soliket/poisson_data.py' adding 'soliket-0.1.dev273+g762dce9/soliket/BandPass.yaml' adding 'soliket-0.1.dev273+g762dce9/soliket/cross_correlation.py' adding 'soliket-0.1.dev273+g762dce9/soliket/cash_data.py' adding 'soliket-0.1.dev273+g762dce9/soliket/lensing/data' adding 'soliket-0.1.dev273+g762dce9/soliket/lensing/lensing.py' adding 'soliket-0.1.dev273+g762dce9/soliket/lensing/__init__.py' adding 'soliket-0.1.dev273+g762dce9/soliket/lensing/data/binnedcov.txt' adding 'soliket-0.1.dev273+g762dce9/soliket/lensing/data/binningmatrix.txt' adding 'soliket-0.1.dev273+g762dce9/soliket/lensing/data/binnedauto.txt' adding 'soliket-0.1.dev273+g762dce9/soliket/tests/data' adding 'soliket-0.1.dev273+g762dce9/soliket/tests/test_bias.py' adding 'soliket-0.1.dev273+g762dce9/soliket/tests/test_ps.py' adding 'soliket-0.1.dev273+g762dce9/soliket/tests/test_clusters.yaml' adding 'soliket-0.1.dev273+g762dce9/soliket/tests/test_multi.yaml' adding 'soliket-0.1.dev273+g762dce9/soliket/tests/test_cash.py' adding 'soliket-0.1.dev273+g762dce9/soliket/tests/test_cross_correlation.yaml' adding 'soliket-0.1.dev273+g762dce9/soliket/tests/test_gaussian.py' adding 'soliket-0.1.dev273+g762dce9/soliket/tests/test_cross_correlation.py' adding 'soliket-0.1.dev273+g762dce9/soliket/tests/test_clusters.py' adding 'soliket-0.1.dev273+g762dce9/soliket/tests/test_poisson.py' adding 'soliket-0.1.dev273+g762dce9/soliket/tests/test_cosmopower.py' adding 'soliket-0.1.dev273+g762dce9/soliket/tests/test_ccl.ipynb' adding 'soliket-0.1.dev273+g762dce9/soliket/tests/test_lensing_lite.yaml' adding 'soliket-0.1.dev273+g762dce9/soliket/tests/test_mflike.py' adding 'soliket-0.1.dev273+g762dce9/soliket/tests/test_lensing.yaml' adding 'soliket-0.1.dev273+g762dce9/soliket/tests/test_lensing_lite.py' adding 'soliket-0.1.dev273+g762dce9/soliket/tests/__init__.py' adding 'soliket-0.1.dev273+g762dce9/soliket/tests/test_mflike.yaml' adding 'soliket-0.1.dev273+g762dce9/soliket/tests/test_lensing.py' adding 'soliket-0.1.dev273+g762dce9/soliket/tests/test_cluster.ipynb' adding 'soliket-0.1.dev273+g762dce9/soliket/tests/test_multi.py' adding 'soliket-0.1.dev273+g762dce9/soliket/tests/test_xcorr.yaml' adding 'soliket-0.1.dev273+g762dce9/soliket/tests/test_bias.yaml' adding 'soliket-0.1.dev273+g762dce9/soliket/tests/test_runs.py' adding 'soliket-0.1.dev273+g762dce9/soliket/tests/test_xcorr.py' adding 'soliket-0.1.dev273+g762dce9/soliket/tests/data/lcl_hsc.txt' adding 'soliket-0.1.dev273+g762dce9/soliket/tests/data/dndz_hsc.txt' adding 'soliket-0.1.dev273+g762dce9/soliket/tests/data/des_s-act_kappa.toy-sim.sacc.fits' adding 'soliket-0.1.dev273+g762dce9/soliket/tests/data/unwise_g-so_kappa.sim.sacc.fits' adding 'soliket-0.1.dev273+g762dce9/soliket/tests/data/cs82_gs-planck_kappa_binned.sim.sacc.fits' adding 'soliket-0.1.dev273+g762dce9/soliket/xcorr/data' adding 'soliket-0.1.dev273+g762dce9/soliket/xcorr/xcorr.py' adding 'soliket-0.1.dev273+g762dce9/soliket/xcorr/XcorrLikelihood.yaml' adding 'soliket-0.1.dev273+g762dce9/soliket/xcorr/__init__.py' adding 'soliket-0.1.dev273+g762dce9/soliket/xcorr/limber.py' adding 'soliket-0.1.dev273+g762dce9/soliket/xcorr/data/clgg.txt' adding 'soliket-0.1.dev273+g762dce9/soliket/xcorr/data/clkg.txt' adding 'soliket-0.1.dev273+g762dce9/soliket/xcorr/data/dndz.txt' adding 'soliket-0.1.dev273+g762dce9/soliket/mflike/TheoryForge_MFLike.yaml' adding 'soliket-0.1.dev273+g762dce9/soliket/mflike/theoryforge_MFLike.py' adding 'soliket-0.1.dev273+g762dce9/soliket/mflike/__init__.py' adding 'soliket-0.1.dev273+g762dce9/soliket/mflike/mflike.py' adding 'soliket-0.1.dev273+g762dce9/soliket/mflike/MFLike.yaml' adding 'soliket-0.1.dev273+g762dce9/soliket/data/simulated_clkk_SO_Apr17_mv_nlkk_deproj0_SENS1_fsky_16000_iterOn_20191109' adding 'soliket-0.1.dev273+g762dce9/soliket/data/CosmoPower' adding 'soliket-0.1.dev273+g762dce9/soliket/data/xcorr_simulated' adding 'soliket-0.1.dev273+g762dce9/soliket/data/simulated_clkk_SO_Apr17_mv_nlkk_deproj0_SENS1_fsky_16000_iterOn_20191109/simulated_clkk_SO_Apr17_mv_nlkk_deproj0_SENS1_fsky_16000_iterOn_20191109_sim_16_bandpowers.txt' adding 'soliket-0.1.dev273+g762dce9/soliket/data/simulated_clkk_SO_Apr17_mv_nlkk_deproj0_SENS1_fsky_16000_iterOn_20191109/simulated_clkk_SO_Apr17_mv_nlkk_deproj0_SENS1_fsky_16000_iterOn_20191109_sim_08_bandpowers.txt' adding 'soliket-0.1.dev273+g762dce9/soliket/data/simulated_clkk_SO_Apr17_mv_nlkk_deproj0_SENS1_fsky_16000_iterOn_20191109/simulated_clkk_SO_Apr17_mv_nlkk_deproj0_SENS1_fsky_16000_iterOn_20191109_sim_01_bandpowers.txt' adding 'soliket-0.1.dev273+g762dce9/soliket/data/simulated_clkk_SO_Apr17_mv_nlkk_deproj0_SENS1_fsky_16000_iterOn_20191109/simulated_clkk_SO_Apr17_mv_nlkk_deproj0_SENS1_fsky_16000_iterOn_20191109_sim_07_bandpowers.txt' adding 'soliket-0.1.dev273+g762dce9/soliket/data/simulated_clkk_SO_Apr17_mv_nlkk_deproj0_SENS1_fsky_16000_iterOn_20191109/simulated_clkk_SO_Apr17_mv_nlkk_deproj0_SENS1_fsky_16000_iterOn_20191109_sim_04_bandpowers.txt' adding 'soliket-0.1.dev273+g762dce9/soliket/data/simulated_clkk_SO_Apr17_mv_nlkk_deproj0_SENS1_fsky_16000_iterOn_20191109/simulated_clkk_SO_Apr17_mv_nlkk_deproj0_SENS1_fsky_16000_iterOn_20191109_sim_12_bandpowers.txt' adding 'soliket-0.1.dev273+g762dce9/soliket/data/simulated_clkk_SO_Apr17_mv_nlkk_deproj0_SENS1_fsky_16000_iterOn_20191109/simulated_clkk_SO_Apr17_mv_nlkk_deproj0_SENS1_fsky_16000_iterOn_20191109_sim_00_bandpowers.txt' adding 'soliket-0.1.dev273+g762dce9/soliket/data/simulated_clkk_SO_Apr17_mv_nlkk_deproj0_SENS1_fsky_16000_iterOn_20191109/simulated_clkk_SO_Apr17_mv_nlkk_deproj0_SENS1_fsky_16000_iterOn_20191109_sim_19_bandpowers.txt' adding 'soliket-0.1.dev273+g762dce9/soliket/data/simulated_clkk_SO_Apr17_mv_nlkk_deproj0_SENS1_fsky_16000_iterOn_20191109/simulated_clkk_SO_Apr17_mv_nlkk_deproj0_SENS1_fsky_16000_iterOn_20191109_sim_13_bandpowers.txt' adding 'soliket-0.1.dev273+g762dce9/soliket/data/simulated_clkk_SO_Apr17_mv_nlkk_deproj0_SENS1_fsky_16000_iterOn_20191109/simulated_clkk_SO_Apr17_mv_nlkk_deproj0_SENS1_fsky_16000_iterOn_20191109_sim_03_bandpowers.txt' adding 'soliket-0.1.dev273+g762dce9/soliket/data/simulated_clkk_SO_Apr17_mv_nlkk_deproj0_SENS1_fsky_16000_iterOn_20191109/simulated_clkk_SO_Apr17_mv_nlkk_deproj0_SENS1_fsky_16000_iterOn_20191109_sim_05_bandpowers.txt' adding 'soliket-0.1.dev273+g762dce9/soliket/data/simulated_clkk_SO_Apr17_mv_nlkk_deproj0_SENS1_fsky_16000_iterOn_20191109/simulated_clkk_SO_Apr17_mv_nlkk_deproj0_SENS1_fsky_16000_iterOn_20191109_sim_18_bandpowers.txt' adding 'soliket-0.1.dev273+g762dce9/soliket/data/simulated_clkk_SO_Apr17_mv_nlkk_deproj0_SENS1_fsky_16000_iterOn_20191109/simulated_clkk_SO_Apr17_mv_nlkk_deproj0_SENS1_fsky_16000_iterOn_20191109_sim_02_bandpowers.txt' adding 'soliket-0.1.dev273+g762dce9/soliket/data/simulated_clkk_SO_Apr17_mv_nlkk_deproj0_SENS1_fsky_16000_iterOn_20191109/simulated_clkk_SO_Apr17_mv_nlkk_deproj0_SENS1_fsky_16000_iterOn_20191109_binned_covmat.txt' adding 'soliket-0.1.dev273+g762dce9/soliket/data/simulated_clkk_SO_Apr17_mv_nlkk_deproj0_SENS1_fsky_16000_iterOn_20191109/simulated_clkk_SO_Apr17_mv_nlkk_deproj0_SENS1_fsky_16000_iterOn_20191109_sim_15_bandpowers.txt' adding 'soliket-0.1.dev273+g762dce9/soliket/data/simulated_clkk_SO_Apr17_mv_nlkk_deproj0_SENS1_fsky_16000_iterOn_20191109/simulated_clkk_SO_Apr17_mv_nlkk_deproj0_SENS1_fsky_16000_iterOn_20191109_sim_11_bandpowers.txt' adding 'soliket-0.1.dev273+g762dce9/soliket/data/simulated_clkk_SO_Apr17_mv_nlkk_deproj0_SENS1_fsky_16000_iterOn_20191109/simulated_clkk_SO_Apr17_mv_nlkk_deproj0_SENS1_fsky_16000_iterOn_20191109_sim_09_bandpowers.txt' adding 'soliket-0.1.dev273+g762dce9/soliket/data/simulated_clkk_SO_Apr17_mv_nlkk_deproj0_SENS1_fsky_16000_iterOn_20191109/simulated_clkk_SO_Apr17_mv_nlkk_deproj0_SENS1_fsky_16000_iterOn_20191109_sim_17_bandpowers.txt' adding 'soliket-0.1.dev273+g762dce9/soliket/data/simulated_clkk_SO_Apr17_mv_nlkk_deproj0_SENS1_fsky_16000_iterOn_20191109/simulated_clkk_SO_Apr17_mv_nlkk_deproj0_SENS1_fsky_16000_iterOn_20191109_sim_14_bandpowers.txt' adding 'soliket-0.1.dev273+g762dce9/soliket/data/simulated_clkk_SO_Apr17_mv_nlkk_deproj0_SENS1_fsky_16000_iterOn_20191109/simulated_clkk_SO_Apr17_mv_nlkk_deproj0_SENS1_fsky_16000_iterOn_20191109_sim_06_bandpowers.txt' adding 'soliket-0.1.dev273+g762dce9/soliket/data/simulated_clkk_SO_Apr17_mv_nlkk_deproj0_SENS1_fsky_16000_iterOn_20191109/simulated_clkk_SO_Apr17_mv_nlkk_deproj0_SENS1_fsky_16000_iterOn_20191109_sim_10_bandpowers.txt' adding 'soliket-0.1.dev273+g762dce9/soliket/data/CosmoPower/CP_paper' adding 'soliket-0.1.dev273+g762dce9/soliket/data/CosmoPower/CP_paper/CMB' adding 'soliket-0.1.dev273+g762dce9/soliket/data/CosmoPower/CP_paper/CMB/cmb_TE_PCAplusNN.pkl' adding 'soliket-0.1.dev273+g762dce9/soliket/data/CosmoPower/CP_paper/CMB/cmb_EE_NN.pkl' adding 'soliket-0.1.dev273+g762dce9/soliket/data/CosmoPower/CP_paper/CMB/cmb_TT_NN.pkl' adding 'soliket-0.1.dev273+g762dce9/soliket/data/xcorr_simulated/clkg_noiseless.txt' adding 'soliket-0.1.dev273+g762dce9/soliket/data/xcorr_simulated/dndz.txt' adding 'soliket-0.1.dev273+g762dce9/soliket/data/xcorr_simulated/clgg_noiseless.txt' adding 'soliket-0.1.dev273+g762dce9/soliket/clusters/data' adding 'soliket-0.1.dev273+g762dce9/soliket/clusters/sz_utils.py' adding 'soliket-0.1.dev273+g762dce9/soliket/clusters/tinker.py' adding 'soliket-0.1.dev273+g762dce9/soliket/clusters/massfunc.py' adding 'soliket-0.1.dev273+g762dce9/soliket/clusters/survey.py' adding 'soliket-0.1.dev273+g762dce9/soliket/clusters/clusters.py' adding 'soliket-0.1.dev273+g762dce9/soliket/clusters/__init__.py' adding 'soliket-0.1.dev273+g762dce9/soliket/clusters/data/selFn_equD56' adding 'soliket-0.1.dev273+g762dce9/soliket/clusters/data/ACTPol_Cond_scatv5.fits' adding 'soliket-0.1.dev273+g762dce9/soliket/clusters/data/E-D56Clusters.fits' adding 'soliket-0.1.dev273+g762dce9/soliket/clusters/data/selFn_equD56/QFit.fits' adding 'soliket-0.1.dev273+g762dce9/soliket/clusters/data/selFn_equD56/RMSMap_Arnaud_M2e14_z0p4.fits.gz' adding 'soliket-0.1.dev273+g762dce9/soliket/clusters/data/selFn_equD56/fRelWeights.fits' adding 'soliket-0.1.dev273+g762dce9/soliket/clusters/data/selFn_equD56/areaMask.fits.gz' adding 'soliket-0.1.dev273+g762dce9/soliket/clusters/data/selFn_equD56/RMSTab.fits' adding 'soliket-0.1.dev273+g762dce9/ci_scripts/install_class_linux.sh' adding 'soliket-0.1.dev273+g762dce9/ci_scripts/install_class_osx.sh' adding 'soliket-0.1.dev273+g762dce9/soliket.egg-info/PKG-INFO' adding 'soliket-0.1.dev273+g762dce9/soliket.egg-info/SOURCES.txt' adding 'soliket-0.1.dev273+g762dce9/soliket.egg-info/top_level.txt' adding 'soliket-0.1.dev273+g762dce9/soliket.egg-info/dependency_links.txt' adding 'soliket-0.1.dev273+g762dce9/soliket.egg-info/not-zip-safe' adding 'soliket-0.1.dev273+g762dce9/soliket.egg-info/requires.txt' removing 'soliket-0.1.dev273+g762dce9' (and everything under it) /home/vagrant/miniconda/envs/cobaya-env/lib/python3.7/site-packages/setuptools/config/expand.py:144: UserWarning: File '/vagrant/SOLikeT/README.rst' cannot be found warnings.warn(f"File {path!r} cannot be found") /home/vagrant/miniconda/envs/cobaya-env/lib/python3.7/site-packages/setuptools/installer.py:30: SetuptoolsDeprecationWarning: setuptools.installer is deprecated. Requirements should be satisfied by a PEP 517 installer. SetuptoolsDeprecationWarning, /home/vagrant/miniconda/envs/cobaya-env/lib/python3.7/site-packages/setuptools/config/expand.py:144: UserWarning: File '/vagrant/SOLikeT/README.rst' cannot be found warnings.warn(f"File {path!r} cannot be found") GLOB finish: packaging after 7.39 seconds copying new sdistfile to '/home/vagrant/.tox/distshare/soliket-0.1.dev273+g762dce9.zip' package .tmp/package/1/soliket-0.1.dev273+g762dce9.zip copied to dist/soliket-0.1.dev273+g762dce9.zip (/vagrant/SOLikeT/.tox) test uses /vagrant/SOLikeT/.tox/test/bin/python test start: getenv /vagrant/SOLikeT/.tox/test test cannot reuse: no previous config /vagrant/SOLikeT/.tox/test/.tox-config1 test create: /vagrant/SOLikeT/.tox/test removing /vagrant/SOLikeT/.tox/test setting PATH=/vagrant/SOLikeT/.tox/test/bin:/home/vagrant/miniconda/envs/cobaya-env/bin:/home/vagrant/miniconda/condabin:/home/vagrant/miniconda/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin [18504] /vagrant/SOLikeT/.tox$ /home/vagrant/miniconda/bin/conda env create -p test --file /vagrant/SOLikeT/tox_conda_tmp5h3331kn.yaml Collecting package metadata (repodata.json): done Solving environment: done Downloading and Extracting Packages Preparing transaction: done Verifying transaction: done Executing transaction: done Installing pip dependencies: | Ran pip subprocess with arguments: ['/vagrant/SOLikeT/.tox/test/bin/python', '-m', 'pip', 'install', '-U', '-r', '/vagrant/SOLikeT/condaenv.q4ie1vdp.requirements.txt', '--exists-action=b'] Pip subprocess output: Collecting fgspectra@ git+https://github.com/simonsobs/fgspectra@act_sz_x_cib#egg=fgspectra Cloning https://github.com/simonsobs/fgspectra (to revision act_sz_x_cib) to /tmp/pip-install-yh05ky5p/fgspectra_9ad052e6180a4ae6ad3c694036ff633a Resolved https://github.com/simonsobs/fgspectra to commit 50865f485ce37f128b58ac52a39a57d669038608 Preparing metadata (setup.py): started Preparing metadata (setup.py): finished with status 'done' Collecting mflike@ git+https://github.com/simonsobs/lat_mflike@master Cloning https://github.com/simonsobs/lat_mflike (to revision master) to /tmp/pip-install-yh05ky5p/mflike_e28894f251a747b7a5bb27b44da769ac Resolved https://github.com/simonsobs/lat_mflike to commit f27186500e42b1deb80b75a3256530bc3baacaae Preparing metadata (setup.py): started Preparing metadata (setup.py): finished with status 'done' Collecting numpy Using cached numpy-1.21.6-cp37-cp37m-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (15.7 MB) Collecting scipy Using cached scipy-1.7.3-cp37-cp37m-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (38.1 MB) Collecting pandas Using cached pandas-1.3.5-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (11.3 MB) Collecting scikit-learn Using cached scikit_learn-1.0.2-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (24.8 MB) Collecting pyyaml Using cached PyYAML-6.0-cp37-cp37m-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (596 kB) Collecting py-bobyqa Using cached Py_BOBYQA-1.3-py3-none-any.whl Requirement already satisfied: packaging in ./.tox/test/lib/python3.7/site-packages (from -r /vagrant/SOLikeT/requirements.txt (line 7)) (23.0) Collecting tqdm Using cached tqdm-4.64.1-py2.py3-none-any.whl (78 kB) Collecting portalocker Using cached portalocker-2.7.0-py2.py3-none-any.whl (15 kB) Collecting dill Using cached dill-0.3.6-py3-none-any.whl (110 kB) Collecting fuzzywuzzy Using cached fuzzywuzzy-0.18.0-py2.py3-none-any.whl (18 kB) Collecting astropy Using cached astropy-4.3.1-cp37-cp37m-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (10.7 MB) Collecting camb Using cached camb-1.3.6.tar.gz (1.7 MB) Preparing metadata (setup.py): started Preparing metadata (setup.py): finished with status 'done' Collecting cosmopower Using cached cosmopower-0.1.0-py3-none-any.whl (35 kB) Collecting getdist Using cached GetDist-1.4-py3-none-any.whl Collecting cobaya Using cached cobaya-3.2.2-py3-none-any.whl Collecting pyccl Using cached pyccl-2.6.1.tar.gz (12.6 MB) Preparing metadata (setup.py): started Preparing metadata (setup.py): finished with status 'done' Collecting sacc Using cached sacc-0.7-py3-none-any.whl Collecting pytz>=2017.3 Using cached pytz-2022.7.1-py2.py3-none-any.whl (499 kB) Collecting python-dateutil>=2.7.3 Using cached python_dateutil-2.8.2-py2.py3-none-any.whl (247 kB) Collecting joblib>=0.11 Using cached joblib-1.2.0-py3-none-any.whl (297 kB) Collecting threadpoolctl>=2.0.0 Using cached threadpoolctl-3.1.0-py3-none-any.whl (14 kB) Collecting pyerfa>=1.7.3 Using cached pyerfa-2.0.0.1-cp37-cp37m-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (746 kB) Requirement already satisfied: importlib-metadata in ./.tox/test/lib/python3.7/site-packages (from astropy->-r /vagrant/SOLikeT/requirements.txt (line 12)) (4.11.4) Collecting sympy>=1.0 Using cached sympy-1.10.1-py3-none-any.whl (6.4 MB) Collecting tensorflow>2.0 Pip subprocess error: Running command git clone --filter=blob:none --quiet https://github.com/simonsobs/fgspectra /tmp/pip-install-yh05ky5p/fgspectra_9ad052e6180a4ae6ad3c694036ff633a Running command git checkout -b act_sz_x_cib --track origin/act_sz_x_cib Switched to a new branch 'act_sz_x_cib' Branch 'act_sz_x_cib' set up to track remote branch 'act_sz_x_cib' from 'origin'. Running command git clone --filter=blob:none --quiet https://github.com/simonsobs/lat_mflike /tmp/pip-install-yh05ky5p/mflike_e28894f251a747b7a5bb27b44da769ac /vagrant/SOLikeT/.tox/test/.tmpyd1iid7f: line 3: 20887 Killed /vagrant/SOLikeT/.tox/test/bin/python -m pip install -U -r /vagrant/SOLikeT/condaenv.q4ie1vdp.requirements.txt --exists-action=b failed CondaEnvException: Pip failed ERROR: invocation failed (exit code 1) ERROR: InvocationError for command /home/vagrant/miniconda/bin/conda env create -p test --file /vagrant/SOLikeT/tox_conda_tmp5h3331kn.yaml (exited with code 1) test finish: getenv /vagrant/SOLikeT/.tox/test after 197.98 seconds ___________________________________________________________________________________________________________________________________________________________ summary ____________________________________________________________________________________________________________________________________________________________ ERROR: test: InvocationError for command /home/vagrant/miniconda/bin/conda env create -p test --file /vagrant/SOLikeT/tox_conda_tmp5h3331kn.yaml (exited with code 1) cleanup /vagrant/SOLikeT/.tox/.tmp/package/1/soliket-0.1.dev273+g762dce9.zip

One last update. Tests run fine when using the py310 tox environment that is used in the action workflow: tox -e py310-test-all-latest-cov

However, using the py37-test-oldest doesn't, resulting in the same error as above, when running with just test.

README.md

setup.cfg

… in INSTALL.rst

cmbant · 2023-01-23T16:53:49Z

cf conda-forge/camb-feedstock#45. If you have an actions example where camb is that version old version when installed via pip would be interested to see it - I vaguely thought it was coming from some gcc/gfortran version dependency issue via conda only.

BrianJKoopman · 2023-01-23T19:18:13Z

cf conda-forge/camb-feedstock#45. If you have an actions example where camb is that version old version when installed via pip would be interested to see it - I vaguely thought it was coming from some gcc/gfortran version dependency issue via conda only.

It's not on GitHub Actions, but when running through the installation and test running instructions here locally on a VM on my laptop I do end up in a state where the installed camb version is 0.1.8.1. I could try to produce a repeatable Vagrantfile if that would be useful.

EDIT: I should also say, it looks like it's grabbing camb-1.3.6 when installing, so not sure what's going on there.

cmbant · 2023-01-24T09:22:59Z

Hmm, yes, pip in my experience always grabs the latest one OK. There must be a conda install of 0.1.8.1 as well somewhere? (could it be via ccl? I know they like to install camb via conda). Maybe the full install logs have some clues?

itrharrison · 2023-01-24T13:19:52Z

@BrianJKoopman @cmbant I think I have solved the problem... when using a vagrant VM it seems that make is not installed by default. This causes the pip install of camb to fail, although this failure is unhelpfully hidden by similar failures in pyccl and tensorflow.

Ensuring makewas available fixed both tox -re py310-test and tox -re test.

Is camb 0.8.1 the most recent version which was distirbuted pre-compiled maybe?

itrharrison · 2023-01-24T13:21:48Z

A solution is to include make as part of the conda env specification, although maybe there is some reason to not want to leave a user with a version of such a fundamental tool which is from conda?

cmbant · 2023-01-24T13:28:31Z

The CAMB pip version has never been precompiled (except for Windows). 0.1.8.1 is I think the conda version compatible with gcc < 7. What command is wrongly installing the old version?

itrharrison · 2023-01-24T13:49:47Z

@BrianJKoopman can you do pip freeze | grep camb at a location where you end up with 0.1.8.1 in order to see if that gives clues where it is from?

BrianJKoopman · 2023-01-24T17:32:50Z

@BrianJKoopman can you do pip freeze | grep camb at a location where you end up with 0.1.8.1 in order to see if that gives clues where it is from?

That only shows:

$ pip freeze | grep camb
camb==0.1.8.1

@BrianJKoopman @cmbant I think I have solved the problem... when using a vagrant VM it seems that make is not installed by default. This causes the pip install of camb to fail, although this failure is unhelpfully hidden by similar failures in pyccl and tensorflow.

Ensuring makewas available fixed both tox -re py310-test and tox -re test.

Is camb 0.8.1 the most recent version which was distirbuted pre-compiled maybe?

That's interesting, it looks like make is already installed in the VM I'm running (which looks like I got from the first line in the instructions here.) What base box are you using? I'm on ubuntu/jammy64 (virtualbox, 20221229.0.0).

BrianJKoopman

My local issues running the tests with Python 3.7 aside, this looks good to me.

Developers are probably running a more recent version, and the py37 version works in the actions workflows. It seems maybe we're on the right track figuring out the issue too, but perhaps it's not worth holding up merging this.

* added configuration for tox-conda * run tests with tox-conda * data file locations and test skips * make tests run in workflow * add pytest-cov * removed codestyle env typo * added codestyle to envlist * tox-conda version for codestyle * added python version to codestyle workflow * codestyle on 3.10 specifically * flake8 fixes * do not install everything for codestyle * added temp fix for flaky sklearn install * modified installation and testing instructions * update action versions * remove inapplicable parts of astropy cookie cutter, mention conda env in INSTALL.rst * add make to conda deps

* added hartlap ncovsims to crosscorrelation * Implement tests with tox-conda (#92) * added configuration for tox-conda * run tests with tox-conda * data file locations and test skips * make tests run in workflow * add pytest-cov * removed codestyle env typo * added codestyle to envlist * tox-conda version for codestyle * added python version to codestyle workflow * codestyle on 3.10 specifically * flake8 fixes * do not install everything for codestyle * added temp fix for flaky sklearn install * modified installation and testing instructions * update action versions * remove inapplicable parts of astropy cookie cutter, mention conda env in INSTALL.rst * add make to conda deps * test ncovsims * added hartlap test

* added configuration for tox-conda * run tests with tox-conda * data file locations and test skips * make tests run in workflow * add pytest-cov * removed codestyle env typo * added codestyle to envlist * tox-conda version for codestyle * added python version to codestyle workflow * codestyle on 3.10 specifically * flake8 fixes * do not install everything for codestyle * added temp fix for flaky sklearn install * modified installation and testing instructions * update action versions * remove inapplicable parts of astropy cookie cutter, mention conda env in INSTALL.rst * add make to conda deps

* added hartlap ncovsims to crosscorrelation * Implement tests with tox-conda (#92) * added configuration for tox-conda * run tests with tox-conda * data file locations and test skips * make tests run in workflow * add pytest-cov * removed codestyle env typo * added codestyle to envlist * tox-conda version for codestyle * added python version to codestyle workflow * codestyle on 3.10 specifically * flake8 fixes * do not install everything for codestyle * added temp fix for flaky sklearn install * modified installation and testing instructions * update action versions * remove inapplicable parts of astropy cookie cutter, mention conda env in INSTALL.rst * add make to conda deps * test ncovsims * added hartlap test

itrharrison added 3 commits December 9, 2022 15:56

added configuration for tox-conda

74a39cc

run tests with tox-conda

f90dc15

data file locations and test skips

57b62c1

itrharrison added repo Related to repo functionality tests Improvements to tests labels Dec 9, 2022

itrharrison added this to the v0.1 milestone Dec 9, 2022

itrharrison self-assigned this Dec 9, 2022

itrharrison added 10 commits December 9, 2022 18:21

make tests run in workflow

48f4ad1

add pytest-cov

da9d36d

removed codestyle env typo

1d46e7b

added codestyle to envlist

d1d9858

tox-conda version for codestyle

167c77b

added python version to codestyle workflow

39d5acd

codestyle on 3.10 specifically

ec1c4a0

flake8 fixes

d599afb

do not install everything for codestyle

54399e9

added temp fix for flaky sklearn install

d1b2a49

itrharrison requested a review from BrianJKoopman December 13, 2022 11:46

itrharrison added 2 commits December 14, 2022 15:23

modified installation and testing instructions

a128249

update action versions

b9606d0

BrianJKoopman reviewed Jan 3, 2023

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itrharrison mentioned this pull request Jan 23, 2023

PyPI packaging of SOLikeT #93

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1 task

remove inapplicable parts of astropy cookie cutter, mention conda env…

762dce9

… in INSTALL.rst

add make to conda deps

61893fb

itrharrison requested a review from BrianJKoopman January 24, 2023 17:24

itrharrison added the non cosmo Infrastructure tasks which do not require specific domain knowledge in cosmology label Jan 24, 2023

BrianJKoopman approved these changes Jan 24, 2023

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itrharrison merged commit 7f6ec6a into master Jan 25, 2023

itrharrison deleted the dev-tox-conda-tests branch March 3, 2023 09:50

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