Revert "Make remixing/saving faster by marking all assets as clean to start." #4181
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Reverts #4153
This was marking assets as clean after the whole vm load process is done, which is after the vm has the chance to modify scratch2 vector assets and stuff them back into storage. That means there are assets in the vm that are actually NEW after loadProject has run. We should move the marking as clean to right after the asset is loaded from storage
/cc @kchadha @rschamp