Stars
scplotter is an R package that is built upon plotthis. It provides a set of functions to visualize single-cell sequencing data in an easy and efficient way.
Helper functions for analyzing single cell transcriptomics SCT data
Annotate sequences by BLAST using NCBI taxonomy information
Pickaxe is a viral discovery tool to help identify potential infectious agents in NGS sequencing reads
A high throughput sequence read toolset using a streaming approach facilitated by Linux pipes
Viral Identification and Discovery - A viral characterization pipeline built in Nextflow.
Manipulate CSV files on the command line using dplyr
Software, architecture, and data index design for the 2018/2019 Virus Discovery Project
A curated list of awesome R packages, frameworks and software.
Material for R/Bioconductor meetup in Boston, Feb 5th 2020
R-code used for single-cell RNA-Seq analysis of kidney data.
R package to visualize scRNA sequencing data.
Analysis files accompanying eLife paper entitle "Single cell analysis of HSV-1 infection reveals anti-viral and developmental programs are activated in distinct sub-populations with opposite outcomes"
Master the command line, in one page
The second version of the Kraken taxonomic sequence classification system
Platform for Interactive analysis and Visualization Of Transcriptomics data
a Bioinformatics Application for Navigating De novo Assembly Graphs Easily