scplotter is an R package that is built upon plotthis. It provides a set of functions to visualize single-cell sequencing data in an easy and efficient way.

Make Regular Expressions More Exciting

Sundry Utility Functions

Helper functions for analyzing single cell transcriptomics SCT data

Sequences and annotation files for BKV

Annotate sequences by BLAST using NCBI taxonomy information

Pickaxe is a viral discovery tool to help identify potential infectious agents in NGS sequencing reads

A high throughput sequence read toolset using a streaming approach facilitated by Linux pipes

Quality of RNA-Seq Toolset

Viral Identification and Discovery - A viral characterization pipeline built in Nextflow.

Manipulate CSV files on the command line using dplyr

Software, architecture, and data index design for the 2018/2019 Virus Discovery Project

A curated list of awesome R packages, frameworks and software.

Material for R/Bioconductor meetup in Boston, Feb 5th 2020

R-code used for single-cell RNA-Seq analysis of kidney data.

R package to visualize scRNA sequencing data.

Explore and share your scRNAseq clustering results

Convert various sequence formats to FASTA

Analysis files accompanying eLife paper entitle "Single cell analysis of HSV-1 infection reveals anti-viral and developmental programs are activated in distinct sub-populations with opposite outcomes"

Master the command line, in one page

The second version of the Kraken taxonomic sequence classification system

🌈 Interactive analysis of metagenomics data

Ultra-efficient taxonomic mapping of NGS data

Platform for Interactive analysis and Visualization Of Transcriptomics data

a Bioinformatics Application for Navigating De novo Assembly Graphs Easily