Bump mambaorg/micromamba from 1.4.3 to 2.0.4 in /containers

Bumps mambaorg/micromamba from 1.4.3 to 2.0.4. --- updated-dependencies: - dependency-name: mambaorg/micromamba dependency-type: direct:production update-type: version-update:semver-major ... Signed-off-by: dependabot[bot] <support@github.com>
paulsengroup · Nov 26, 2024 · 62ad949 · 62ad949
1 parent 78f0733
commit 62ad949
Show file tree

Hide file tree

Showing 19 changed files with 20 additions and 20 deletions.
diff --git a/containers/cluster-profiler__v4.8.1.Dockerfile b/containers/cluster-profiler__v4.8.1.Dockerfile
@@ -2,7 +2,7 @@
 #
 # SPDX-License-Identifier: MIT
 
-FROM mambaorg/micromamba:1.4.3 AS base
+FROM mambaorg/micromamba:2.0.4 AS base
 
 ARG CONTAINER_VERSION
 

diff --git a/containers/comparative-analysis__v1.0.0.Dockerfile b/containers/comparative-analysis__v1.0.0.Dockerfile
@@ -2,7 +2,7 @@
 #
 # SPDX-License-Identifier: MIT
 
-FROM mambaorg/micromamba:1.4.3 AS base
+FROM mambaorg/micromamba:2.0.4 AS base
 
 ARG CONTAINER_VERSION
 

diff --git a/containers/cooltools__v0.5.4.Dockerfile b/containers/cooltools__v0.5.4.Dockerfile
@@ -2,7 +2,7 @@
 #
 # SPDX-License-Identifier: MIT
 
-FROM mambaorg/micromamba:1.4.3 AS base
+FROM mambaorg/micromamba:2.0.4 AS base
 
 ARG MAMBA_DOCKERFILE_ACTIVATE=1
 

diff --git a/containers/dchic__vd4eb244.Dockerfile b/containers/dchic__vd4eb244.Dockerfile
@@ -30,7 +30,7 @@ RUN apt-get update \
 && chmod 755 dchic/dchicf.r
 
 
-FROM mambaorg/micromamba:1.4.3 AS base
+FROM mambaorg/micromamba:2.0.4 AS base
 
 ARG CONTAINER_VERSION
 

diff --git a/containers/diff-expression-analysis__v1.0.0.Dockerfile b/containers/diff-expression-analysis__v1.0.0.Dockerfile
@@ -2,7 +2,7 @@
 #
 # SPDX-License-Identifier: MIT
 
-FROM mambaorg/micromamba:1.4.3 AS base
+FROM mambaorg/micromamba:2.0.4 AS base
 
 ARG CONTAINER_VERSION
 

diff --git a/containers/diffdomain__v1c4b3db.Dockerfile b/containers/diffdomain__v1c4b3db.Dockerfile
@@ -19,7 +19,7 @@ RUN apt-get update \
 && find diffdomain -type f -exec chmod uga+r {} + \
 && find diffdomain -type d -exec chmod uga+rx {} +
 
-FROM mambaorg/micromamba:1.4.3 AS base
+FROM mambaorg/micromamba:2.0.4 AS base
 
 ARG MAMBA_DOCKERFILE_ACTIVATE=1
 

diff --git a/containers/hic-balancing__v1.0.1.Dockerfile b/containers/hic-balancing__v1.0.1.Dockerfile
@@ -61,7 +61,7 @@ RUN cd /tmp/hic2cool-ng*/ \
 && cmake --install build
 
 
-FROM mambaorg/micromamba:1.5.8-jammy AS base
+FROM mambaorg/micromamba:1.5.10-jammy AS base
 
 ARG CONTAINER_TITLE
 ARG CONTAINER_VERSION

diff --git a/containers/hic-breakfinder__v30a0dcc.Dockerfile b/containers/hic-breakfinder__v30a0dcc.Dockerfile
@@ -2,7 +2,7 @@
 #
 # SPDX-License-Identifier: MIT
 
-FROM mambaorg/micromamba:1.4.3 AS builder
+FROM mambaorg/micromamba:2.0.4 AS builder
 
 ARG CONTAINER_VERSION
 
@@ -33,7 +33,7 @@ RUN cd hic_breakfinder \
 && make -j $(nproc)
 
 
-FROM mambaorg/micromamba:1.4.3 AS base
+FROM mambaorg/micromamba:2.0.4 AS base
 
 ARG CONTAINER_VERSION
 

diff --git a/containers/hicexplorer__v3.7.2.Dockerfile b/containers/hicexplorer__v3.7.2.Dockerfile
@@ -2,7 +2,7 @@
 #
 # SPDX-License-Identifier: MIT
 
-FROM mambaorg/micromamba:1.4.3 AS base
+FROM mambaorg/micromamba:2.0.4 AS base
 
 ARG MAMBA_DOCKERFILE_ACTIVATE=1
 

diff --git a/containers/hictrans__ve26ad6a.Dockerfile b/containers/hictrans__ve26ad6a.Dockerfile
@@ -15,7 +15,7 @@ RUN apt-get update \
 && git checkout "$HICTRANS_VERSION"
 
 
-FROM mambaorg/micromamba:1.4.3 AS base
+FROM mambaorg/micromamba:2.0.4 AS base
 
 ARG CONTAINER_VERSION
 

diff --git a/containers/hint__v2.2.8.Dockerfile b/containers/hint__v2.2.8.Dockerfile
@@ -12,7 +12,7 @@ RUN apt-get update \
 && curl -L "$BICSEQ2_SEG_URL" | tar -xzf -
 
 
-FROM mambaorg/micromamba:1.4.3 AS base
+FROM mambaorg/micromamba:2.0.4 AS base
 
 ARG CONTAINER_VERSION
 

diff --git a/containers/image-analysis__v1.0.0.Dockerfile b/containers/image-analysis__v1.0.0.Dockerfile
@@ -2,7 +2,7 @@
 #
 # SPDX-License-Identifier: MIT
 
-FROM mambaorg/micromamba:1.4.3 AS base
+FROM mambaorg/micromamba:2.0.4 AS base
 
 ARG CONTAINER_VERSION
 

diff --git a/containers/macs2__v2.2.9.1.Dockerfile b/containers/macs2__v2.2.9.1.Dockerfile
@@ -2,7 +2,7 @@
 #
 # SPDX-License-Identifier: MIT
 
-FROM mambaorg/micromamba:1.4.3 AS base
+FROM mambaorg/micromamba:2.0.4 AS base
 
 ARG CONTAINER_VERSION
 ARG MAMBA_DOCKERFILE_ACTIVATE=1

diff --git a/containers/maxhic__vb553b8f.Dockerfile b/containers/maxhic__vb553b8f.Dockerfile
@@ -21,7 +21,7 @@ RUN apt-get update \
 
 RUN if [ -z "$CONTAINER_VERSION" ]; then echo "Missing CONTAINER_VERSION --build-arg" && exit 1; fi
 
-FROM mambaorg/micromamba:1.4.3 AS base
+FROM mambaorg/micromamba:2.0.4 AS base
 
 ARG MAMBA_DOCKERFILE_ACTIVATE=1
 

diff --git a/containers/microarray-analysis__v1.0.0.Dockerfile b/containers/microarray-analysis__v1.0.0.Dockerfile
@@ -2,7 +2,7 @@
 #
 # SPDX-License-Identifier: MIT
 
-FROM mambaorg/micromamba:1.4.3 AS base
+FROM mambaorg/micromamba:2.0.4 AS base
 
 ARG MAMBA_DOCKERFILE_ACTIVATE=1
 

diff --git a/containers/plotting__v1.0.0.Dockerfile b/containers/plotting__v1.0.0.Dockerfile
@@ -2,7 +2,7 @@
 #
 # SPDX-License-Identifier: MIT
 
-FROM mambaorg/micromamba:1.4.3 AS base
+FROM mambaorg/micromamba:2.0.4 AS base
 
 ARG MAMBA_DOCKERFILE_ACTIVATE=1
 

diff --git a/containers/pyutils__v1.0.1.Dockerfile b/containers/pyutils__v1.0.1.Dockerfile
@@ -2,7 +2,7 @@
 #
 # SPDX-License-Identifier: MIT
 
-FROM mambaorg/micromamba:1.4.3 AS base
+FROM mambaorg/micromamba:2.0.4 AS base
 
 ARG MAMBA_DOCKERFILE_ACTIVATE=1
 

diff --git a/containers/seqkit__v2.5.1.Dockerfile b/containers/seqkit__v2.5.1.Dockerfile
@@ -2,7 +2,7 @@
 #
 # SPDX-License-Identifier: MIT
 
-FROM mambaorg/micromamba:1.4.3 AS base
+FROM mambaorg/micromamba:2.0.4 AS base
 
 ARG CONTAINER_VERSION
 ARG MAMBA_DOCKERFILE_ACTIVATE=1

diff --git a/containers/wiggletools__v1.2.11.Dockerfile b/containers/wiggletools__v1.2.11.Dockerfile
@@ -2,7 +2,7 @@
 #
 # SPDX-License-Identifier: MIT
 
-FROM mambaorg/micromamba:1.4.3 AS base
+FROM mambaorg/micromamba:2.0.4 AS base
 
 ARG CONTAINER_VERSION
 ARG MAMBA_DOCKERFILE_ACTIVATE=1