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paulsengroup

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  1. hictk hictk Public

    Blazing fast toolkit to work with .hic and .cool files

    C++ 24 1

  2. hictkpy hictkpy Public

    Python bindings for hictk: read and write .cool and .hic files directly from Python

    C++ 13

  3. StripePy StripePy Public

    StripePy recognizes architectural stripes in 3C and Hi-C contact maps using geometric reasoning

    Python 3 2

  4. modle modle Public

    High-performance stochastic modeling of DNA loop extrusion interactions

    C++ 16 2

  5. hictkR hictkR Public

    R bindings for hictk: read .cool and .hic files directly from R

    C++ 3

Repositories

Showing 10 of 12 repositories
  • StripePy Public

    StripePy recognizes architectural stripes in 3C and Hi-C contact maps using geometric reasoning

    paulsengroup/StripePy’s past year of commit activity
    Python 3 MIT 2 8 3 Updated Dec 20, 2024
  • 2024-stripepy-paper Public

    This repository contains the source code used for the data analysis for the StripePy manuscript (preprint available soon)

    paulsengroup/2024-stripepy-paper’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Dec 20, 2024
  • 2022-mcf10a-cancer-progression Public

    Data analysis code for: "Loss of multi-level 3D genome organization during breast cancer progression"

    paulsengroup/2022-mcf10a-cancer-progression’s past year of commit activity
    Jupyter Notebook 1 MIT 1 1 3 Updated Dec 18, 2024
  • hictkR Public

    R bindings for hictk: read .cool and .hic files directly from R

    paulsengroup/hictkR’s past year of commit activity
    C++ 3 MIT 0 1 1 Updated Dec 4, 2024
  • hictkpy Public

    Python bindings for hictk: read and write .cool and .hic files directly from Python

    paulsengroup/hictkpy’s past year of commit activity
    C++ 13 MIT 0 0 1 Updated Dec 2, 2024
  • NCHG Public
    paulsengroup/NCHG’s past year of commit activity
    C++ 0 GPL-3.0 0 0 2 Updated Dec 2, 2024
  • hictk Public

    Blazing fast toolkit to work with .hic and .cool files

    paulsengroup/hictk’s past year of commit activity
    C++ 24 MIT 1 11 (1 issue needs help) 5 Updated Dec 2, 2024
  • ci-docker-images Public

    Repository to build and host CI Docker images for various projects

    paulsengroup/ci-docker-images’s past year of commit activity
    Dockerfile 1 MIT 0 0 0 Updated Nov 7, 2024
  • modle Public

    High-performance stochastic modeling of DNA loop extrusion interactions

    paulsengroup/modle’s past year of commit activity
    C++ 16 2 4 8 Updated Sep 14, 2024
  • 2023-hictk-paper Public

    Repository hosting code used to generate the benchmarks and data for hictk's paper

    paulsengroup/2023-hictk-paper’s past year of commit activity
    Jupyter Notebook 0 MIT 0 0 5 Updated Apr 23, 2024
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