Test: Phold#11661
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anna-parker
commented
May 17, 2026
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| include { PHOLD_RUN } from './modules/nf-core/phold/run/main' | |||
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| workflow { | |||
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needs to be added to proper tests - but works!
anna-parker
commented
May 17, 2026
| accelerator = 1 | ||
| memory = '10 GB' | ||
| ext.prefix = 'test_output' | ||
| ext.args = '--database /home/ubuntu/virusbioinfhack/nf-core-modules/data/phold_db' |
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db has to be downloaded in advance and this takes quite some time
anna-parker
commented
May 17, 2026
| tuple val(meta), path(input) | ||
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| output: | ||
| tuple val(meta), path("*/phold_3di.fasta") , emit: fasta_3di |
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This should probably be altered so that phold is the modifiable prefix and the "prefix" here is actually the output dir
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Closes #XXX
topic: versions- See version_topicslabelnf-core modules test <MODULE> --profile dockernf-core modules test <MODULE> --profile singularitynf-core modules test <MODULE> --profile condanf-core subworkflows test <SUBWORKFLOW> --profile dockernf-core subworkflows test <SUBWORKFLOW> --profile singularitynf-core subworkflows test <SUBWORKFLOW> --profile conda