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PR checklist

Closes #XXX

  • This comment contains a description of changes (with reason).
  • If you've fixed a bug or added code that should be tested, add tests!
  • If you've added a new tool - have you followed the module conventions in the contribution docs
  • If necessary, include test data in your PR.
  • Remove all TODO statements.
  • Broadcast software version numbers to topic: versions - See version_topics
  • Follow the naming conventions.
  • Follow the parameters requirements.
  • Follow the input/output options guidelines.
  • Add a resource label
  • Use BioConda and BioContainers if possible to fulfil software requirements.
  • Ensure that the test works with either Docker / Singularity. Conda CI tests can be quite flaky:
    • For modules:
      • nf-core modules test <MODULE> --profile docker
      • nf-core modules test <MODULE> --profile singularity
      • nf-core modules test <MODULE> --profile conda
    • For subworkflows:
      • nf-core subworkflows test <SUBWORKFLOW> --profile docker
      • nf-core subworkflows test <SUBWORKFLOW> --profile singularity
      • nf-core subworkflows test <SUBWORKFLOW> --profile conda

Co-authored-by: Matthias Hörtenhuber <mashehu@users.noreply.github.com>
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@LouisLeNezet LouisLeNezet left a comment

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Just a few question but good to go otherwise.

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@LouisLeNezet LouisLeNezet left a comment

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Good for me too !

@kubranarci kubranarci added this pull request to the merge queue Feb 12, 2026
Merged via the queue into nf-core:master with commit 5ec2bc2 Feb 12, 2026
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@kubranarci kubranarci deleted the migrate-to-topics-rtgtools branch February 12, 2026 15:48
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update module: RTGTOOLS/FORMAT

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