Commits on Nov 1, 2023

1. Rename instances of "monkeypox" to "mpox" …

   This commit goes through the repo and basically does a find-and-replace of "monkeypox" to "mpox, except for a handful of locations like the #monkeypox-updates Slack notification.
   
   This shouldn't change appearance of build outputs except for:
   - Updating to "Built by nextstrain/mpox"
   - Updating page titles to be more descriptive of what each page is showing in terms of lineages / clades
   - A bug fix to the page description to link to proper build URLs (currently these go to 404)
   
   This has the side effect that intermediate files will begin to propagate to https://data.nextstrain.org/files/workflows/mpox/sequences.fasta.xz, etc... rather than `/files/workflows/monkeypox`. This may affect users who've been relying on the current URLs. Nothing should break for these users as the old files will continue to exist but they will no longer receive updated data. I think this is an okay trade-off in terms of downstream impacts.

   

   trvrb authored and victorlin committed Nov 1, 2023
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2. git subrepo pull (merge) --force ingest/vendored …

   subrepo:
     subdir:   "ingest/vendored"
     merged:   "a0faef5"
   upstream:
     origin:   "https://github.com/nextstrain/ingest"
     branch:   "main"
     commit:   "a0faef5"
   git-subrepo:
     version:  "0.4.6"
     origin:   "https://github.com/ingydotnet/git-subrepo"
     commit:   "110b9eb"

   

   victorlin committed Nov 1, 2023
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