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[phylogenetic] B.1 tree fails due to "export: has duplicate nodes or "treetime: nodes with name None"

bugSomething isn't workingSomething isn't working

Status: Open.

#310 In nextstrain/mpox;

· corneliusroemer opened on Apr 23, 2025

Relax Nextclade dataset coverage thresholds

Status: Open.

#308 In nextstrain/mpox;

· corneliusroemer opened on Mar 19, 2025

Properly handle CSV-like TSVs

Status: Open.

#298 In nextstrain/mpox;

· joverlee521 opened on Dec 6, 2024

assign-colors scripts are largely identical

Status: Open.

#286 In nextstrain/mpox;

· jameshadfield opened on Nov 3, 2024

Reached maximum recursion depth when building phylogenetic trees

bugSomething isn't workingSomething isn't working

Status: Open.

#282 In nextstrain/mpox;

· mengfeip opened on Oct 20, 2024

Move hardcode filter query into configuration files

Status: Open.

#273 In nextstrain/mpox;

· huddlej opened on Aug 20, 2024

Divergent branches on the mpox build

enhancementNew feature or requestNew feature or request

Status: Open.

#271 In nextstrain/mpox;

· BryanTegomoh opened on Aug 17, 2024

Mpox Clade I delineation?

documentationImprovements or additions to documentationImprovements or additions to documentation

Status: Open.

#265 In nextstrain/mpox;

· woguta opened on Aug 8, 2024

Update phylogenetic GH Action workflows

Status: Open.

#259 In nextstrain/mpox;

· joverlee521 opened on Jun 18, 2024

[phylo] CI workflow DAG includes <code>update_example_data</code>

bugSomething isn't workingSomething isn't working

Status: Open.

#237 In nextstrain/mpox;

· joverlee521 opened on Feb 13, 2024

<code>fix_tree.py</code> can create invalid tree

bugSomething isn't workingSomething isn't working

Status: Open.

#232 In nextstrain/mpox;

· joverlee521 opened on Jan 22, 2024

Potentially include year-only sequences

enhancementNew feature or requestNew feature or request

Status: Open.

#231 In nextstrain/mpox;

· corneliusroemer opened on Jan 21, 2024