PBS example scripts for the Imperial HPC

Brian's PBS scripts for running the rare disease cell typing jobs in parallel are here: https://github.com/neurogenomics/rare_disease_celltyping/tree/master/pbs

There are four types of pbs scripts that one can use on the Imperial HPC. To submit a job to the cluster use the following:

qsub path/to/pbs_script.pbs

Note that the fodler you're in when you submit the job is important as this will be the working directory for the job. I like to structure this as follows:

project_folder/pbs/pbs_script.pbs

and then submit the job from project_folder

The four types of jobs are single and parallel, CPU and GPU jobs. Note that these can all be submitted to different queues so it's worth inspecting the queues to get more info on which is most suitable.