Merge branch '6b4_model' into 'dev'

6b4 model See merge request research/medaka!581
nanoporetech · May 20, 2024 · b034a63 · b034a63
2 parents 43882a4 + 4db4c26
commit b034a63
Show file tree

Hide file tree

Showing 2 changed files with 12 additions and 1 deletion.
diff --git a/medaka/data/r1041_e82_260bps_joint_apk_ulk_v5.0.0_model.tar.gz b/medaka/data/r1041_e82_260bps_joint_apk_ulk_v5.0.0_model.tar.gz
diff --git a/medaka/options.py b/medaka/options.py
@@ -82,7 +82,13 @@
     'dna_r9.4.1_e8_hac@v3.3':
         ('r941_min_hac_g507', 'r941_min_hac_variant_g507'),
     'dna_r9.4.1_e8_sup@v3.3':
-        ('r941_min_sup_g507', 'r941_min_sup_variant_g507')}
+        ('r941_min_sup_g507', 'r941_min_sup_variant_g507'),
+    # APK joint polishing
+    # Not adding this since simultaneously matching on multiple tags is not
+    # implemented
+    # 'dna_r10.4.1_e8.2_260bps_apk_sup@v5.0.0':
+    #     ('r1041_e82_260bps_joint_apk_ulk_v5.0.0', None),
+}
 
 # archived models are not included in packages but can be downloaded on the fly
 # this list SHOULD NOT be added to, any new models should go into the above
@@ -162,6 +168,8 @@
     # r941 e81 variant calling
     'r941_e81_fast_variant_g514', 'r941_e81_hac_variant_g514',
     'r941_e81_sup_variant_g514',
+    # APK joint polishing consensus
+    'r1041_e82_260bps_joint_apk_ulk_v5.0.0'
 ]
 
 # add basecaller models, then deduplicate and sort