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@nanoporetech

Oxford Nanopore Technologies

Nanopores for single molecule (DNA/RNA, protein) analysis using the MinION, GridION and PromethION systems

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  1. dorado dorado Public

    Oxford Nanopore's Basecaller

    C++ 560 68

  2. remora remora Public

    Methylation/modified base calling separated from basecalling.

    Python 162 21

  3. medaka medaka Public

    Sequence correction provided by ONT Research

    Python 430 76

  4. pod5-file-format pod5-file-format Public

    Pod5: a high performance file format for nanopore reads.

    C++ 139 19

  5. fast-ctc-decode fast-ctc-decode Public

    Blitzing Fast CTC Beam Search Decoder

    Rust 178 27

  6. bonito bonito Public

    A PyTorch Basecaller for Oxford Nanopore Reads

    Python 402 122

Repositories

Showing 10 of 90 repositories
  • homebrew-tap Public

    Homebrew casks for applications from Oxford Nanopore Technologies PLC and Metrichor Ltd.

    nanoporetech/homebrew-tap’s past year of commit activity
    Ruby 6 0 0 0 Updated Dec 24, 2024
  • hatch-protobuf Public

    Hatch plugin for generating Python files from Protocol Buffers .proto files

    nanoporetech/hatch-protobuf’s past year of commit activity
    Python 5 0 2 1 Updated Dec 23, 2024
  • modkit Public

    A bioinformatics tool for working with modified bases

    nanoporetech/modkit’s past year of commit activity
    Rust 158 8 114 (1 issue needs help) 0 Updated Dec 21, 2024
  • dorado-docs Public

    Dorado Documentation

    nanoporetech/dorado-docs’s past year of commit activity
    Python 2 0 0 0 Updated Dec 18, 2024
  • dorado Public

    Oxford Nanopore's Basecaller

    nanoporetech/dorado’s past year of commit activity
    C++ 560 68 127 (2 issues need help) 2 Updated Dec 17, 2024
  • minknow_api Public

    Protobuf and gRPC specifications for the MinKNOW API

    nanoporetech/minknow_api’s past year of commit activity
    Python 57 13 29 1 Updated Dec 11, 2024
  • pod5-file-format Public

    Pod5: a high performance file format for nanopore reads.

    nanoporetech/pod5-file-format’s past year of commit activity
    C++ 139 19 30 3 Updated Nov 25, 2024
  • ont-spectre Public
    nanoporetech/ont-spectre’s past year of commit activity
    Python 3 0 3 0 Updated Nov 8, 2024
  • medaka Public

    Sequence correction provided by ONT Research

    nanoporetech/medaka’s past year of commit activity
    Python 430 76 14 0 Updated Oct 11, 2024
  • read_until_api Public

    Read Until client library for Nanopore Sequencing

    nanoporetech/read_until_api’s past year of commit activity
    Python 103 13 0 0 Updated Sep 25, 2024
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