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1. dorado dorado Public

   Oxford Nanopore's Basecaller

   C++ 744 98

2. medaka medaka Public

   Sequence correction provided by ONT Research

   Python 482 85

3. pod5-file-format pod5-file-format Public

   Pod5: a high performance file format for nanopore reads.

   C++ 164 27

4. bonito bonito Public

   A PyTorch Basecaller for Oxford Nanopore Reads

   Python 424 130

5. modkit modkit Public

   A bioinformatics tool for working with modified bases

   Rust 219 19

6. fast-ctc-decode fast-ctc-decode Public

   Blitzing Fast CTC Beam Search Decoder

   Rust 183 27